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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243392 (52 seq.)
>W1710863003
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
184017
183942
-
Thr
CGT
[ENA]
¡û
>W1710872631
LMMD01000002
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
474970
474895
-
Thr
CGT
[ENA]
¡û
>W1710873626
LMMY01000001
Actinomycetota
Aeromicrobium sp. Leaf272 [LMMY]
131605
131680
+
Thr
CGT
[ENA]
¡û
>W1710874228
LMNK01000005
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
120201
120276
+
Thr
CGT
[ENA]
¡û
>W1710874320
LMNM01000003
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
448007
447932
-
Thr
CGT
[ENA]
¡û
>W1710996441
LQBK01000040
Actinomycetota
Kocuria polaris [LQBK]
210517
210442
-
Thr
CGT
[ENA]
¡û
>W131099034
AOSQ01000002
Actinomycetota
Kocuria sp. UCD-OTCP [AOSQ]
34387
34462
+
Thr
CGT
[ENA]
¡û
>W1711125364
LUNF01000196
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
4854
4779
-
Thr
CGT
[ENA]
¡û
>W1711125417
LUNG01000081
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
4985
4910
-
Thr
CGT
[ENA]
¡û
>W1711125438
LUNH01000023
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
84653
84578
-
Thr
CGT
[ENA]
¡û
>W1711125504
LUNI01000054
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
138494
138569
+
Thr
CGT
[ENA]
¡û
>W1711125531
LUNJ01000022
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
4010
4085
+
Thr
CGT
[ENA]
¡û
>W1711491779
MKJW01000074
Actinomycetota
Kocuria sp. CNJ-770 [MKJW]
30347
30422
+
Thr
CGT
[ENA]
¡û
>W141241603
CAHK01000039
Actinomycetota
Brevibacterium senegalense JC43 [CAHK]
34528
34455
-
Thr
CGT
[ENA]
¡û
>WENV170728734
LULF01000330
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
11741
11666
-
Thr
CGT
[ENA]
¢þ
>WENV170729637
LULG01000046
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
84653
84578
-
Thr
CGT
[ENA]
¢þ
>WENV170732620
LULJ01000285
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
4985
4910
-
Thr
CGT
[ENA]
¢þ
>WENV170736271
LULM01000589
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
4854
4779
-
Thr
CGT
[ENA]
¢þ
>WENV170759086
LUMS01002183
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
11700
11625
-
Thr
CGT
[ENA]
¢þ
>WENV170759620
LUMT01000041
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
138494
138569
+
Thr
CGT
[ENA]
¢þ
>WENV170761325
LUMV01000021
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
4010
4085
+
Thr
CGT
[ENA]
¢þ
>WENV170762096
LUMW01000906
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
3598
3523
-
Thr
CGT
[ENA]
¢þ
>C181144010
CP026952
Actinomycetota
Aeromicrobium chenweiae 592 [CP026952]
328259
328334
+
Thr
CGT
-
¡û
>C191134660
CP035103
Actinomycetota
Kocuria rosea ATCC 186 [CP035103]
3076592
3076666
+
Thr
CGT
-
¡û
>C191210291
LR134391
Actinomycetota
Kocuria rosea NCTC7514 [LR134391]
1329753
1329679
-
Thr
CGT
-
¡û
>C191212164
LR134487
Actinomycetota
Kocuria rosea NCTC7512 [LR134487]
1889963
1890037
+
Thr
CGT
-
¡û
>W1910442399
FWFF01000012
Actinomycetota
Brevibacterium yomogidense B Co 03.10 [FWFF]
23365
23292
-
Thr
CGT
[ENA]
¡û
>W1910500355
FXZF01000001
Actinomycetota
Brevibacterium sp. Mu109 [FXZF]
84227
84154
-
Thr
CGT
[ENA]
¡û
>W1910500640
FXZM01000001
Actinomycetota
Brevibacterium jeotgali SJ5-8 [FXZM]
185093
185020
-
Thr
CGT
[ENA]
¡û
>W1911245618
NSKF01000012
Actinomycetota
Kocuria sp. WN036 [NSKF]
77425
77351
-
Thr
CGT
[ENA]
¡û
>W1911596758
PNHK01000002
Actinomycetota
Brevibacterium paucivorans UMB1301 [PNHK]
72283
72356
+
Thr
CGT
[ENA]
¡û
>W1810584703
QFBJ01000017
Actinomycetota
Kocuria rosea ATCC 186 [QFBJ]
28942
29016
+
Thr
CGT
[ENA]
¡û
>W1810584736
QFBK01000011
Actinomycetota
Kocuria rosea ATCC 516 [QFBK]
28950
29024
+
Thr
CGT
[ENA]
¡û
>W1810584767
QFBL01000005
Actinomycetota
Kocuria rosea ATCC 49321 [QFBL]
28919
28993
+
Thr
CGT
[ENA]
¡û
>W1810870275
QUBR01000001
Actinomycetota
Aeromicrobium endophyticum M2KJ-4 [QUBR]
1608652
1608727
+
Thr
CGT
[ENA]
¡û
>W10116443
ADNU01000037
Actinomycetota
Brevibacterium mcbrellneri ATCC 49030 [ADNU]
36589
36662
+
Thr
CGT
[ENA]
¡û
>W1511387236
JSUH01000006
Actinomycetota
Kocuria polaris CMS 76or [JSUH]
209621
209546
-
Thr
CGT
[ENA]
¡û
>W11121112
ADNU01000037
Actinomycetota
Brevibacterium mcbrellneri ATCC 49030 [ADNU]
36589
36662
+
Thr
CGT
[ENA]
¡û
>W1511638455
LDNX01000069
Actinomycetota
Kocuria sp. SM24M-10 [LDNX]
33102
33027
-
Thr
CGT
[ENA]
¡û
>C161036394
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
2914214
2914139
-
Thr
CGT
[Ensembl]
¡û
>C161072572
CP014480
Actinomycetota
Kocuria turfanensis HO-9042 [CP014480]
3165684
3165609
-
Thr
CGT
-
¡û
>W1610725349
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
184017
183942
-
Thr
CGT
[ENA]
¡û
>W1610734977
LMMD01000002
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
474970
474895
-
Thr
CGT
[ENA]
¡û
>W1610735972
LMMY01000001
Actinomycetota
Aeromicrobium sp. Leaf272 [LMMY]
131605
131680
+
Thr
CGT
[ENA]
¡û
>W1610736574
LMNK01000005
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
120201
120276
+
Thr
CGT
[ENA]
¡û
>W1610736666
LMNM01000003
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
448007
447932
-
Thr
CGT
[ENA]
¡û
>W1610851098
LQBK01000040
Actinomycetota
Kocuria polaris [LQBK]
210517
210442
-
Thr
CGT
[ENA]
¡û
>W1610936297
LUNF01000196
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
4854
4779
-
Thr
CGT
[ENA]
¡û
>W1610936350
LUNG01000081
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
4985
4910
-
Thr
CGT
[ENA]
¡û
>W1610936371
LUNH01000023
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
84653
84578
-
Thr
CGT
[ENA]
¡û
>W1610936437
LUNI01000054
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
138494
138569
+
Thr
CGT
[ENA]
¡û
>W1610936464
LUNJ01000022
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
4010
4085
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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