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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243458 (40 seq.)
>W1710784521
LJGZ01000021
Actinomycetota
Streptomyces nanshensis [LJGZ]
372775
372848
+
Ala
TGC
[ENA]
¡û
>W1710865619
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
2428651
2428576
-
Ala
TGC
[ENA]
¡û
>W1710866313
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
2475126
2475051
-
Ala
TGC
[ENA]
¡û
>W1710881431
LMTB01000046
Actinomycetota
Dietzia timorensis [LMTB]
19986
19913
-
Ala
TGC
[ENA]
¡û
>W1711081657
LSSV01000104
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
139553
139626
+
Ala
TGC
[ENA]
¡û
>W1711082296
LSTT01000157
Actinomycetota
Dietzia cinnamea [LSTT]
42416
42343
-
Ala
TGC
[ENA]
¡û
>W131166295
ARCJ01000011
Actinomycetota
Embleya scabrispora DSM 41855 [ARCJ]
147061
147134
+
Ala
TGC
[ENA]
¡û
>W1711139746
LVFF01000040
Actinomycetota
Dietzia maris [LVFF]
42240
42167
-
Ala
TGC
[ENA]
¡û
>W1711187595
LWPP01000365
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
737
810
+
Ala
TGC
[ENA]
¡û
>W1711351228
MDCG01000177
Actinomycetota
Dietzia alimentaria [MDCG]
1985
1912
-
Ala
TGC
[ENA]
¡û
>W1711351664
MDCQ01000082
Actinomycetota
Actinacidiphila rubida rubidus [MDCQ]
9016
9091
+
Ala
TGC
[ENA]
¡û
>W1711796397
MWQN01000001
Actinomycetota
Embleya scabrispora scabrisporus [MWQN]
3348648
3348721
+
Ala
TGC
[ENA]
¡û
>C171044532
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
14918
14991
+
Ala
TGC
-
¡û
>W131099080
AOSR01000002
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
28071
27998
-
Ala
TGC
[ENA]
¡û
>WENV181170057
OEIV010021705
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
310
384
+
Ala
TGC
[ENA]
¢þ
>WENV170973337
MTKY01028878
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
233
308
+
Ala
TGC
[ENA]
¢þ
>C181017327
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
23570
23643
+
Ala
TGC
-
¡û
>C181017377
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
12587
12660
+
Ala
TGC
-
¡û
>C181107031
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
12445
12518
+
Ala
TGC
-
¡û
>C181148303
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
1369369
1369442
+
Ala
TGC
-
¡û
>C191007091
AP019307
Actinomycetota
Nocardioides baekrokdamisoli KCTC 39748 [AP019307]
1703123
1703049
-
Ala
TGC
-
¡û
>W1910141290
BIFH01000027
Actinomycetota
Embleya hyalina NBRC 13850 [BIFH]
146937
147010
+
Ala
TGC
[ENA]
¡û
>W1911279007
NTGA01000012
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
173819
173746
-
Ala
TGC
[ENA]
¡û
>W1911422535
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
2403900
2403973
+
Ala
TGC
[ENA]
¡û
>W1810463929
PZZY01000002
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
626190
626263
+
Ala
TGC
[ENA]
¡û
>W1810580845
QETM01000001
Actinomycetota
Dietzia maris AMT [QETM]
107341
107415
+
Ala
TGC
[ENA]
¡û
>W1810722020
QNTT01000038
Actinomycetota
Dietzia maris SST1 [QNTT]
5539
5466
-
Ala
TGC
[ENA]
¡û
>W11139527
AEKG01000305
Actinomycetota
Dietzia cinnamea P4 [AEKG]
5464
5391
-
Ala
TGC
[ENA]
¡û
>W11178747
AGFF01000003
Actinomycetota
Dietzia alimentaria 72 [AGFF]
112268
112341
+
Ala
TGC
[ENA]
¡û
>C121006190
CP003119
Actinomycetota
Gordonia polyisoprenivorans VH2 [CP003119]
12643
12716
+
Ala
TGC
[Ensembl]
¡û
>W1610069378
BCSL01000001
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
4888
4815
-
Ala
TGC
[ENA]
¡û
>W1610727965
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
2428651
2428576
-
Ala
TGC
[ENA]
¡û
>W1610728659
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
2475126
2475051
-
Ala
TGC
[ENA]
¡û
>W1610743777
LMTB01000046
Actinomycetota
Dietzia timorensis [LMTB]
19986
19913
-
Ala
TGC
[ENA]
¡û
>W1610920492
LSSV01000104
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
139553
139626
+
Ala
TGC
[ENA]
¡û
>W1610921081
LSTT01000157
Actinomycetota
Dietzia cinnamea [LSTT]
42416
42343
-
Ala
TGC
[ENA]
¡û
>W1610950754
LVFF01000040
Actinomycetota
Dietzia maris [LVFF]
42240
42167
-
Ala
TGC
[ENA]
¡û
>W1710066751
BCSL01000001
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
4888
4815
-
Ala
TGC
[ENA]
¡û
>W1710502239
FMCH01000650
Actinomycetota
Streptomyces sp. DvalAA-14 [FMCH]
5895
5820
-
Ala
TGC
[ENA]
¡û
>W1710547634
FODD01000005
Actinomycetota
Actinacidiphila rubida rubidus [FODD]
130936
131011
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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