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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243493 (97 seq.)
>W1710863424
LMFC01000002
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
732604
732677
+
Arg
CCT
[ENA]
¡û
>W1710863624
LMFG01000004
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
49625
49698
+
Arg
CCT
[ENA]
¡û
>W1710868762
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
455639
455566
-
Arg
CCT
[ENA]
¡û
>W1710875663
LMOO01000005
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
604385
604458
+
Arg
CCT
[ENA]
¡û
>W1710877689
LMQI01000001
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
552732
552805
+
Arg
CCT
[ENA]
¡û
>W1710914162
LNTD01000012
Actinomycetota
Cellulomonas sp. B6 [LNTD]
18533
18460
-
Arg
CCT
[ENA]
¡û
>W1711116404
LUAZ01000023
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
8041
7968
-
Arg
CCT
[ENA]
¡û
>W1711134989
LUYL01000010
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
288545
288472
-
Arg
CCT
[ENA]
¡û
>W131182583
ARQM01000013
Actinomycetota
Promicromonospora sukumoe 327MFSha3.1 [ARQM]
278179
278254
+
Arg
CCT
[ENA]
¡û
>W1711178067
LWGL01000001
Actinomycetota
Cellulosimicrobium cellulans [LWGL]
76675
76748
+
Arg
CCT
[ENA]
¡û
>W1712056156
NFZP01000004
Actinomycetota
Cellulomonas iranensis [NFZP]
21295
21222
-
Arg
CCT
[ENA]
¡û
>W131227072
AUEW01000003
Actinomycetota
Cellulomonas sp. URHD0024 [AUEW]
359109
359182
+
Arg
CCT
[ENA]
¡û
>WENV180318004
OBKL01025814
[OBKL] soil metagenome; Alaskan Permafrost
75
148
+
Arg
CCT
[ENA]
¢þ
>W141152991
AXCW01000008
Actinomycetota
Actinotalea ferrariae CF5-4 [AXCW]
6707
6780
+
Arg
CCT
[ENA]
¡û
>W141220260
AZXR01000197
Actinomycetota
Promicromonospora kroppenstedtii DSM 19349 [AZXR]
158
83
-
Arg
CCT
[ENA]
¡û
>W141241262
CAHD01000111
Actinomycetota
Cellulomonas massiliensis JC225 [CAHD]
21252
21325
+
Arg
CCT
[ENA]
¡û
>W141279340
JAGF01000001
Actinomycetota
Cellulomonas sp. KRMCY2 [JAGF]
622666
622593
-
Arg
CCT
[ENA]
¡û
>WENV183726869
PJTO01000314
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
18642
18569
-
Arg
CCT
[ENA]
¢þ
>WENV183728480
PJTQ01000072
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
68940
69013
+
Arg
CCT
[ENA]
¢þ
>WENV183729920
PJTR01000194
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
68476
68549
+
Arg
CCT
[ENA]
¢þ
>WENV183731860
PJTT01000274
[PJTT] soil metagenome; Soil (2) enriched on wood chips
3971
3898
-
Arg
CCT
[ENA]
¢þ
>WENV183731952
PJTU01000022
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
68476
68549
+
Arg
CCT
[ENA]
¢þ
>WENV183732231
PJTW01000015
[PJTW] soil metagenome; Soil enriched on wood chips
68476
68549
+
Arg
CCT
[ENA]
¢þ
>WENV183734419
PJTZ01006500
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
425
498
+
Arg
CCT
[ENA]
¢þ
>WENV183734964
PJUA01000251
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
38560
38485
-
Arg
CCT
[ENA]
¢þ
>WENV183735381
PJUA01020020
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
393
320
-
Arg
CCT
[ENA]
¢þ
>WENV183735402
PJUA01023629
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
19
92
+
Arg
CCT
[ENA]
¢þ
>WENV183736208
PJUC01000142
[PJUC] soil metagenome; Soil enriched on filter paper
48598
48523
-
Arg
CCT
[ENA]
¢þ
>WENV183737703
PJUD01023177
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
488
415
-
Arg
CCT
[ENA]
¢þ
>WENV183739903
PJUF01000058
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
68454
68527
+
Arg
CCT
[ENA]
¢þ
>WENV183743182
PJUJ01000107
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
68476
68549
+
Arg
CCT
[ENA]
¢þ
>WENV183744731
PJUL01000126
[PJUL] feces metagenome; Chicken feces enriched on filter paper
68476
68549
+
Arg
CCT
[ENA]
¢þ
>W141428897
JEOE01000026
Actinomycetota
Cellulomonas sp. HZM [JEOE]
9548
9621
+
Arg
CCT
[ENA]
¡û
>WENV170721605
LSQX01196520
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
185
110
-
Arg
CCT
[ENA]
¢þ
>WENV170961652
MLJW01000352
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
13738
13665
-
Arg
CCT
[ENA]
¢þ
>C181052411
CP021430
Actinomycetota
Cellulomonas sp. PSBB021 [CP021430]
3629770
3629843
+
Arg
CCT
-
¡û
>C191164688
CP039291
Actinomycetota
Cellulomonas shaoxiangyii Z28 [CP039291]
3142338
3142263
-
Arg
CCT
-
¡û
>C191210067
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
3531483
3531410
-
Arg
CCT
-
¡û
>W141564165
JIAN01000008
Actinomycetota
Cellulomonas sp. URHE0023 [JIAN]
27781
27856
+
Arg
CCT
[ENA]
¡û
>W141731266
JNIY01000004
Actinomycetota
Paraoerskovia marina DSM 21750 [JNIY]
324455
324530
+
Arg
CCT
[ENA]
¡û
>W09108533
ABTJ01000009
Actinomycetota
Cellulomonas flavigena DSM 20109 [ABTJ]
51017
50944
-
Arg
CCT
[ENA]
¡û
>W1910129184
BHYL01000125
Actinomycetota
Cellulomonas algicola TKZ-21 [BHYL]
1826
1899
+
Arg
CCT
[ENA]
¡û
>W1910155469
BIMR01000038
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
58604
58677
+
Arg
CCT
[ENA]
¡û
>W1910181050
BJLP01000027
Actinomycetota
Cellulomonas uda NBRC 3747 [BJLP]
4200
4273
+
Arg
CCT
[ENA]
¡û
>W1910181091
BJLQ01000020
Actinomycetota
Cellulomonas gelida NBRC 3748 [BJLQ]
60725
60652
-
Arg
CCT
[ENA]
¡û
>W1910181161
BJLR01000036
Actinomycetota
Cellulomonas cellasea NBRC 3753 [BJLR]
65980
65907
-
Arg
CCT
[ENA]
¡û
>W1911765554
QXCY01000001
Actinomycetota
Promicromonospora thailandica SAI-039 [QXCY]
3190070
3189997
-
Arg
CCT
[ENA]
¡û
>W1911768054
QXFN01000002
Actinomycetota
Cellulomonas telluris CPCC 204705 [QXFN]
374897
374970
+
Arg
CCT
[ENA]
¡û
>W1810058234
PDJH01000001
Actinomycetota
Flavimobilis soli DSM 21574 [PDJH]
2425599
2425525
-
Arg
CCT
[ENA]
¡û
>W1810090091
PGFE01000003
Actinomycetota
Sediminihabitans luteus DSM 25478 [PGFE]
23397
23324
-
Arg
CCT
[ENA]
¡û
>W1810102076
PGTZ01000007
Actinomycetota
Luteimicrobium subarcticum DSM 22413 [PGTZ]
539928
540002
+
Arg
CCT
[ENA]
¡û
>W1810365171
PVTW01000006
Actinomycetota
Isoptericola sp. CG 20/1183 CG 20 [PVTW]
244496
244423
-
Arg
CCT
[ENA]
¡û
>W1810365218
PVTX01000006
Actinomycetota
Isoptericola halotolerans CG 23 [PVTX]
26655
26728
+
Arg
CCT
[ENA]
¡û
>W1810514193
QBUG01000004
Actinomycetota
Promicromonospora sp. AC04 [QBUG]
196488
196562
+
Arg
CCT
[ENA]
¡û
>W1810568788
QEES01000002
Actinomycetota
Cellulomonas sp. WB94 [QEES]
2119181
2119254
+
Arg
CCT
[ENA]
¡û
>W1810573673
QEKX01000001
Actinomycetota
Promicromonospora sukumoe SAI-064 [QEKX]
5356877
5356950
+
Arg
CCT
[ENA]
¡û
>W1810683868
QKWH01000002
Actinomycetota
Xylanimonas oleitrophica PW21 [QKWH]
122272
122345
+
Arg
CCT
[ENA]
¡û
>W1810702154
QMGD01002313
Actinomycetota
Cellulomonas sp. B12 [QMGD]
116
43
-
Arg
CCT
[ENA]
¡û
>W1810702198
QMGE01002224
Actinomycetota
Cellulomonas sp. K38 [QMGE]
181
254
+
Arg
CCT
[ENA]
¡û
>W1810918515
QWKP01000084
Actinomycetota
Cellulomonas rhizosphaerae NEAU-TCZ24 [QWKP]
4300
4373
+
Arg
CCT
[ENA]
¡û
>W1510001124
AXCX01000007
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [AXCX]
43182
43109
-
Arg
CCT
[ENA]
¡û
>W1510010621
BBLX01000002
Actinomycetota
Demequina maris NBRC 109392 [BBLX]
96319
96394
+
Arg
CCT
[ENA]
¡û
>W1510010849
BBMC01000002
Actinomycetota
Demequina rhizosphaerae NBRC 109397 [BBMC]
522008
521933
-
Arg
CCT
[ENA]
¡û
>W1510010917
BBMD01000003
Actinomycetota
Demequina maris NBRC 109398 [BBMD]
55635
55710
+
Arg
CCT
[ENA]
¡û
>W1510010986
BBMF01000004
Actinomycetota
Demequina maris NBRC 110048 [BBMF]
743165
743090
-
Arg
CCT
[ENA]
¡û
>W1510011065
BBMG01000010
Actinomycetota
Demequina rhizosphaerae NBRC 110049 [BBMG]
1410
1335
-
Arg
CCT
[ENA]
¡û
>W1510011094
BBMH01000009
Actinomycetota
Demequina rhizosphaerae NBRC 110050 [BBMH]
275307
275382
+
Arg
CCT
[ENA]
¡û
>W1510015462
BBRA01000001
Actinomycetota
Demequina flava NBRC 105854 [BBRA]
1533605
1533680
+
Arg
CCT
[ENA]
¡û
>W1510015520
BBRB01000002
Actinomycetota
Demequina sediminicola NBRC 105855 [BBRB]
194374
194449
+
Arg
CCT
[ENA]
¡û
>W1510015604
BBRD01000001
Actinomycetota
Demequina aestuarii NBRC 106260 [BBRD]
2318647
2318572
-
Arg
CCT
[ENA]
¡û
>W1510015666
BBRE01000003
Actinomycetota
Demequina oxidasica NBRC 106264 [BBRE]
318353
318278
-
Arg
CCT
[ENA]
¡û
>W1510015701
BBRF01000001
Actinomycetota
Demequina aurantiaca NBRC 106265 [BBRF]
375769
375696
-
Arg
CCT
[ENA]
¡û
>W1510015730
BBRG01000001
Actinomycetota
Demequina globuliformis NBRC 106266 [BBRG]
1635893
1635968
+
Arg
CCT
[ENA]
¡û
>C10103426
CP001964
Actinomycetota
Cellulomonas flavigena DSM 20109 [CP001964]
862543
862616
+
Arg
CCT
[Ensembl]
¡û
>C11105038
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
3531518
3531445
-
Arg
CCT
[Ensembl]
¡û
>C11105108
CP002665
Actinomycetota
Cellulomonas gilvus ATCC 13127 [CP002665]
559843
559916
+
Arg
CCT
[Ensembl]
¡û
>W1511595506
LBMY01000001
Actinomycetota
Cellulomonas sp. FA1 [LBMY]
3731107
3731180
+
Arg
CCT
[ENA]
¡û
>W1511683457
LFKW01000054
Actinomycetota
Cellulomonas sp. A375-1 [LFKW]
8550
8623
+
Arg
CCT
[ENA]
¡û
>W1610029564
AXCY01000002
Actinomycetota
Cellulomonas carbonis T26 [AXCY]
15864
15937
+
Arg
CCT
[ENA]
¡û
>W1610029806
AXNT01000021
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
11561
11634
+
Arg
CCT
[ENA]
¡û
>W1610068082
BCRB01000005
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
51553
51478
-
Arg
CCT
[ENA]
¡û
>W1610207206
FCOT01000012
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
326558
326485
-
Arg
CCT
[ENA]
¡û
>W1610725770
LMFC01000002
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
732604
732677
+
Arg
CCT
[ENA]
¡û
>W1610725970
LMFG01000004
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
49625
49698
+
Arg
CCT
[ENA]
¡û
>W1610731108
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
455639
455566
-
Arg
CCT
[ENA]
¡û
>W1610738009
LMOO01000005
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
604385
604458
+
Arg
CCT
[ENA]
¡û
>W1610740035
LMQI01000001
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
552732
552805
+
Arg
CCT
[ENA]
¡û
>W1610772521
LNTD01000012
Actinomycetota
Cellulomonas sp. B6 [LNTD]
18533
18460
-
Arg
CCT
[ENA]
¡û
>W1610927646
LUAZ01000023
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
8041
7968
-
Arg
CCT
[ENA]
¡û
>W1610946109
LUYL01000010
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
288545
288472
-
Arg
CCT
[ENA]
¡û
>W1710026934
AXCY01000002
Actinomycetota
Cellulomonas carbonis T26 [AXCY]
15864
15937
+
Arg
CCT
[ENA]
¡û
>W1710027134
AXNT01000021
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
11561
11634
+
Arg
CCT
[ENA]
¡û
>W1710050528
BBRN01000005
Actinomycetota
Demequina sp. NBRC 110057 [BBRN]
365854
365781
-
Arg
CCT
[ENA]
¡û
>W1710065455
BCRB01000005
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
51553
51478
-
Arg
CCT
[ENA]
¡û
>W1710207900
FCOT01000012
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
326558
326485
-
Arg
CCT
[ENA]
¡û
>W1710556216
FOKA01000026
Actinomycetota
Cellulomonas marina [FOKA]
832
757
-
Arg
CCT
[ENA]
¡û
>W1710566746
FOSE01000003
Actinomycetota
Cellulomonas sp. KH9 [FOSE]
442196
442271
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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