This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243544 (44 seq.)
>W1711506300
MKWH01000021
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
227737
227660
-
Val
TAC
[ENA]
¡û
>W1711712768
MTCM01000003
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
218265
218188
-
Val
TAC
[ENA]
¡û
>C171118466
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5953862
5953785
-
Val
TAC
-
¡û
>WENV183726749
PJTO01000120
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
70233
70156
-
Val
TAC
[ENA]
¢þ
>WENV183727677
PJTP01000082
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
70233
70156
-
Val
TAC
[ENA]
¢þ
>WENV183728780
PJTQ01000430
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
23630
23707
+
Val
TAC
[ENA]
¢þ
>WENV183730597
PJTS01000169
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
13560
13637
+
Val
TAC
[ENA]
¢þ
>WENV183732307
PJTX01000006
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
165478
165401
-
Val
TAC
[ENA]
¢þ
>WENV183732412
PJTX01000144
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
12878
12953
+
Val
TAC
[ENA]
¢þ
>WENV183733015
PJTY01000019
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
233124
233047
-
Val
TAC
[ENA]
¢þ
>WENV183734026
PJTZ01000022
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
232996
232919
-
Val
TAC
[ENA]
¢þ
>WENV183734073
PJTZ01000040
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
121368
121443
+
Val
TAC
[ENA]
¢þ
>WENV183735117
PJUA01001100
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
180
257
+
Val
TAC
[ENA]
¢þ
>WENV183735652
PJUB01000321
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
23630
23707
+
Val
TAC
[ENA]
¢þ
>WENV183736866
PJUD01000066
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
126175
126252
+
Val
TAC
[ENA]
¢þ
>WENV183737057
PJUD01000316
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
30635
30712
+
Val
TAC
[ENA]
¢þ
>WENV183738876
PJUE01000333
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
23
100
+
Val
TAC
[ENA]
¢þ
>WENV183738902
PJUE01000393
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
30635
30712
+
Val
TAC
[ENA]
¢þ
>WENV183740574
PJUF01003605
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4893
4970
+
Val
TAC
[ENA]
¢þ
>WENV183741405
PJUG01000005
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
371398
371321
-
Val
TAC
[ENA]
¢þ
>WENV183741920
PJUH01000008
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
108664
108741
+
Val
TAC
[ENA]
¢þ
>WENV183742553
PJUI01000013
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
265810
265887
+
Val
TAC
[ENA]
¢þ
>WENV183743015
PJUJ01000008
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
108664
108741
+
Val
TAC
[ENA]
¢þ
>WENV183743257
PJUJ01000259
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
17879
17802
-
Val
TAC
[ENA]
¢þ
>WENV183743825
PJUK01000007
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
108664
108741
+
Val
TAC
[ENA]
¢þ
>WENV183745365
PJUL01038126
[PJUL] feces metagenome; Chicken feces enriched on filter paper
135
212
+
Val
TAC
[ENA]
¢þ
>W09123554
ACHA01000011
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
73998
74073
+
Val
TAC
[ENA]
¡û
>C181226003
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
413359
413282
-
Val
TAC
-
¡û
>C191157506
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
156975
157050
+
Val
TAC
-
¡û
>C191221528
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
336446
336523
+
Val
TAC
-
¡û
>C191222286
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
2151707
2151784
+
Val
TAC
-
¡û
>W141701940
JMLD01000003
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
111693
111770
+
Val
TAC
[ENA]
¡û
>W1910377937
FUKU01000037
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
6257
6180
-
Val
TAC
[ENA]
¡û
>W1910664386
MCAQ01000025
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
267336
267259
-
Val
TAC
[ENA]
¡û
>W1911136227
NOUX01000006
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
248899
248822
-
Val
TAC
[ENA]
¡û
>W1911136262
NOUY01000007
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
168612
168535
-
Val
TAC
[ENA]
¡û
>W1810002556
BEYR01000002
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
314550
314627
+
Val
TAC
[ENA]
¡û
>W1810069107
PEBA01000065
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
536
459
-
Val
TAC
[ENA]
¡û
>W1810531920
QCXX01000004
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
291077
291154
+
Val
TAC
[ENA]
¡û
>W1511590262
LBGU01000028
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
13648
13571
-
Val
TAC
[ENA]
¡û
>W1710521476
FNGK01000016
Bacteroidota
Sphingobacterium mizutaii [FNGK]
818
741
-
Val
TAC
[ENA]
¡û
>W1710538673
FNUT01000001
Bacteroidota
Sphingobacterium lactis [FNUT]
365703
365626
-
Val
TAC
[ENA]
¡û
>W1710576377
FOZZ01000004
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
490
415
-
Val
TAC
[ENA]
¡û
>W1710608364
FXAU01000007
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
125290
125367
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK