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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243547 (97 seq.)
>W131158386
AQUA01000002
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
111875
111802
-
Glu
TTC
[ENA]
¡û
>W131158418
AQUB01000001
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
18344
18417
+
Glu
TTC
[ENA]
¡û
>W131162570
AQYZ01000006
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
32264
32191
-
Glu
TTC
[ENA]
¡û
>W131162938
AQZI01000002
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
146146
146073
-
Glu
TTC
[ENA]
¡û
>W131183098
ARRO01000001
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
71246
71171
-
Glu
TTC
[ENA]
¡û
>W131237914
AUSE01000058
Actinomycetota
actinobacterium SCGC AAA028-I14 [AUSE]
33466
33393
-
Glu
TTC
[ENA]
¡û
>WENV016718
AACY020468813
Marine microbial communities from Global Ocean Sampling (GOS)
2660
2735
+
Glu
TTC
[ENA]
>WENV180110831
OAPN01008857
[OAPN] marine metagenome; 2011
576
503
-
Glu
TTC
[ENA]
¢þ
>WENV180113906
OAPR01050776
[OAPR] marine metagenome; seawater
132
205
+
Glu
TTC
[ENA]
¢þ
>WENV016916
AACY020472216
Marine microbial communities from Global Ocean Sampling (GOS)
1410
1485
+
Glu
TTC
[ENA]
>WENV180311173
OBJT01147880
[OBJT] soil metagenome; soil
349
276
-
Glu
TTC
[ENA]
¢þ
>WENV180357465
OBNN01013519
[OBNN] marine metagenome; Coastal water
542
469
-
Glu
TTC
[ENA]
¢þ
>WENV180357924
OBNO01020686
[OBNO] marine metagenome; ENVO 00002150
90
163
+
Glu
TTC
[ENA]
¢þ
>WENV180377326
OBON01011031
[OBON] marine metagenome; sea water
669
742
+
Glu
TTC
[ENA]
¢þ
>WENV180384023
OBOW01000523
[OBOW] marine metagenome; seawater
174
247
+
Glu
TTC
[ENA]
¢þ
>WENV180392922
OBPP01025949
[OBPP] marine metagenome; ENVO:00002042
165
92
-
Glu
TTC
[ENA]
¢þ
>WENV181120878
OEFK01092643
[OEFK] marine metagenome; ENVO:00002010 seawater
19
92
+
Glu
TTC
[ENA]
¢þ
>WENV181368380
OFQL01001686
[OFQL] freshwater metagenome; Freshwater Lake
1210
1283
+
Glu
TTC
[ENA]
¢þ
>WENV181369945
OFQR01002983
[OFQR] freshwater metagenome; Freshwater Lake
600
527
-
Glu
TTC
[ENA]
¢þ
>WENV181370303
OFQS01002740
[OFQS] freshwater metagenome; Freshwater Lake
720
793
+
Glu
TTC
[ENA]
¢þ
>WENV181370634
OFQT01001323
[OFQT] freshwater metagenome; Freshwater Lake
1999
2072
+
Glu
TTC
[ENA]
¢þ
>WENV181377144
OFRA01002920
[OFRA] wastewater metagenome; Lake Maggiore Verbania
3350
3277
-
Glu
TTC
[ENA]
¢þ
>WENV181377543
OFRA01016256
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1271
1344
+
Glu
TTC
[ENA]
¢þ
>WENV181379808
OFRD01009706
[OFRD] wastewater metagenome; Exp Tend CN 100WW
493
420
-
Glu
TTC
[ENA]
¢þ
>WENV181386964
OFRL01027489
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
563
636
+
Glu
TTC
[ENA]
¢þ
>WENV181387259
OFRL01070447
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
409
482
+
Glu
TTC
[ENA]
¢þ
>WENV181395840
OFSB01008869
[OFSB] freshwater metagenome; Freshwater Lake
314
241
-
Glu
TTC
[ENA]
¢þ
>WENV181399418
OFSE01030643
[OFSE] wastewater metagenome; Exp Tend VB 50WW
597
524
-
Glu
TTC
[ENA]
¢þ
>WENV181400395
OFSF01005580
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1058
985
-
Glu
TTC
[ENA]
¢þ
>WENV181401026
OFSF01044085
[OFSF] wastewater metagenome; Exp Tend VB 100WW
781
853
+
Glu
TTC
[ENA]
¢þ
>W141170881
AXZA01000019
Actinomycetota
actinobacterium SCGC AAA044-D11 [AXZA]
111241
111166
-
Glu
TTC
[ENA]
¡û
>WENV181836023
OGVJ01000089
[OGVJ] freshwater metagenome; freshwater
192
267
+
Glu
TTC
[ENA]
¢þ
>WENV181836190
OGVJ01001626
[OGVJ] freshwater metagenome; freshwater
1298
1371
+
Glu
TTC
[ENA]
¢þ
>WENV181836827
OGVJ01035357
[OGVJ] freshwater metagenome; freshwater
94
167
+
Glu
TTC
[ENA]
¢þ
>WENV181838041
OGVM01002161
[OGVM] freshwater metagenome; freshwater
392
465
+
Glu
TTC
[ENA]
¢þ
>WENV181838556
OGVN01003573
[OGVN] freshwater metagenome; freshwater
1387
1460
+
Glu
TTC
[ENA]
¢þ
>WENV181842686
OGVT01011408
[OGVT] freshwater metagenome; freshwater
220
293
+
Glu
TTC
[ENA]
¢þ
>WENV181843298
OGVU01007349
[OGVU] freshwater metagenome; freshwater
1126
1053
-
Glu
TTC
[ENA]
¢þ
>WENV181848376
OGVZ01006214
[OGVZ] freshwater metagenome; freshwater
1767
1840
+
Glu
TTC
[ENA]
¢þ
>WENV181850829
OGWE01000810
[OGWE] freshwater metagenome; freshwater
1919
1992
+
Glu
TTC
[ENA]
¢þ
>WENV181852041
OGWF01003738
[OGWF] freshwater metagenome; freshwater
355
428
+
Glu
TTC
[ENA]
¢þ
>WENV181852441
OGWF01024275
[OGWF] freshwater metagenome; freshwater
423
498
+
Glu
TTC
[ENA]
¢þ
>WENV181853258
OGWI01001030
[OGWI] freshwater metagenome; freshwater
1513
1440
-
Glu
TTC
[ENA]
¢þ
>WENV181855805
OGWM01002040
[OGWM] freshwater metagenome; freshwater
1629
1556
-
Glu
TTC
[ENA]
¢þ
>WENV181857089
OGWN01050340
[OGWN] freshwater metagenome; freshwater
171
244
+
Glu
TTC
[ENA]
¢þ
>W141202930
AZHS01000010
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
29079
29152
+
Glu
TTC
[ENA]
¡û
>WENV182865798
OKRQ01002638
[OKRQ] freshwater metagenome; freshwater
482
409
-
Glu
TTC
[ENA]
¢þ
>WENV183669579
ORJL010856686
[ORJL] groundwater metagenome; groundwater
361
434
+
Glu
TTC
[ENA]
¢þ
>WENV183670392
ORJL010940675
[ORJL] groundwater metagenome; groundwater
1585
1658
+
Glu
TTC
[ENA]
¢þ
>WENV183674228
ORJL011363630
[ORJL] groundwater metagenome; groundwater
3392
3319
-
Glu
TTC
[ENA]
¢þ
>WENV170570417
FLOH01000004
[FLOH] marine metagenome; water
665582
665657
+
Glu
TTC
[ENA]
¢þ
>WENV170601498
FUWD010176778
[FUWD] metagenome; unknown
210
283
+
Glu
TTC
[ENA]
¢þ
>WENV170604266
FUWD010381624
[FUWD] metagenome; unknown
615
542
-
Glu
TTC
[ENA]
¢þ
>WENV170604287
FUWD010382816
[FUWD] metagenome; unknown
595
520
-
Glu
TTC
[ENA]
¢þ
>WENV170609679
FUWD011467302
[FUWD] metagenome; unknown
457
384
-
Glu
TTC
[ENA]
¢þ
>WENV170625444
FUWD013197667
[FUWD] metagenome; unknown
3552
3477
-
Glu
TTC
[ENA]
¢þ
>WENV170625448
FUWD013197668
[FUWD] metagenome; unknown
86
11
-
Glu
TTC
[ENA]
¢þ
>WENV170633684
FUWD013400194
[FUWD] metagenome; unknown
3552
3477
-
Glu
TTC
[ENA]
¢þ
>WENV170633688
FUWD013400195
[FUWD] metagenome; unknown
86
11
-
Glu
TTC
[ENA]
¢þ
>WENV170645542
JNSK01000093
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1263
1336
+
Glu
TTC
[ENA]
¢þ
>WENV170645575
JNSK01000197
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2998
3073
+
Glu
TTC
[ENA]
¢þ
>WENV170961765
MLJW01001084
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
4125
4050
-
Glu
TTC
[ENA]
¢þ
>C181018674
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
337721
337648
-
Glu
TTC
-
¡û
>C181018708
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
380290
380217
-
Glu
TTC
-
¡û
>C181018745
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
416342
416269
-
Glu
TTC
-
¡û
>C181018781
CP015606
Actinomycetota
Actinobacteria bacterium IMCC26077 [CP015606]
393381
393308
-
Glu
TTC
-
¡û
>C181020853
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
1337909
1337982
+
Glu
TTC
-
¡û
>C181020890
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1222181
1222254
+
Glu
TTC
-
¡û
>C181020964
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1229281
1229354
+
Glu
TTC
-
¡û
>C181021000
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1216296
1216369
+
Glu
TTC
-
¡û
>C181021036
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1191914
1191987
+
Glu
TTC
-
¡û
>C181021074
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1185274
1185347
+
Glu
TTC
-
¡û
>C181021106
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
1270500
1270573
+
Glu
TTC
-
¡û
>C181021148
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1204897
1204970
+
Glu
TTC
-
¡û
>C181021184
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1187566
1187639
+
Glu
TTC
-
¡û
>C181021262
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
1262599
1262672
+
Glu
TTC
-
¡û
>C181021298
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1130956
1131029
+
Glu
TTC
-
¡û
>C181021348
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
92543
92470
-
Glu
TTC
-
¡û
>C181021375
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
1286114
1286187
+
Glu
TTC
-
¡û
>WENV028789
AACY021145542
Marine microbial communities from Global Ocean Sampling (GOS)
310
385
+
Glu
TTC
[ENA]
>WENV046139
AACY022575634
Marine microbial communities from Global Ocean Sampling (GOS)
327
402
+
Glu
TTC
[ENA]
>WENV047180
AACY022644540
Marine microbial communities from Global Ocean Sampling (GOS)
493
418
-
Glu
TTC
[ENA]
>WENV057293
AACY023290432
Marine microbial communities from Global Ocean Sampling (GOS)
473
398
-
Glu
TTC
[ENA]
>WENV057364
AACY023292596
Marine microbial communities from Global Ocean Sampling (GOS)
460
535
+
Glu
TTC
[ENA]
>WENV057387
AACY023293364
Marine microbial communities from Global Ocean Sampling (GOS)
280
355
+
Glu
TTC
[ENA]
>WENV057406
AACY023293847
Marine microbial communities from Global Ocean Sampling (GOS)
324
399
+
Glu
TTC
[ENA]
>WENV057643
AACY023301148
Marine microbial communities from Global Ocean Sampling (GOS)
475
550
+
Glu
TTC
[ENA]
>WENV057720
AACY023304413
Marine microbial communities from Global Ocean Sampling (GOS)
1175
1100
-
Glu
TTC
[ENA]
>WENV058056
AACY023315890
Marine microbial communities from Global Ocean Sampling (GOS)
903
978
+
Glu
TTC
[ENA]
>WENV058283
AACY023323338
Marine microbial communities from Global Ocean Sampling (GOS)
2
77
+
Glu
TTC
[ENA]
>WENV058752
AACY023340212
Marine microbial communities from Global Ocean Sampling (GOS)
602
677
+
Glu
TTC
[ENA]
>WENV058851
AACY023344380
Marine microbial communities from Global Ocean Sampling (GOS)
1097
1172
+
Glu
TTC
[ENA]
>WENV006154
AACY020169323
Marine microbial communities from Global Ocean Sampling (GOS)
141
216
+
Glu
TTC
[ENA]
>WENV006370
AACY020172328
Marine microbial communities from Global Ocean Sampling (GOS)
1800
1875
+
Glu
TTC
[ENA]
>WENV007385
AACY020193750
Marine microbial communities from Global Ocean Sampling (GOS)
697
772
+
Glu
TTC
[ENA]
>WENV074560
AACY023983013
Marine microbial communities from Global Ocean Sampling (GOS)
884
809
-
Glu
TTC
[ENA]
>WENV074922
AACY024004337
Marine microbial communities from Global Ocean Sampling (GOS)
633
558
-
Glu
TTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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