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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243630 (100 seq.)
>W1710872991
LMML01000006
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
1748
1823
+
Phe
GAA
[ENA]
¡û
>W1710873096
LMMN01000012
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
103025
102950
-
Phe
GAA
[ENA]
¡û
>W1710873223
LMMQ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
489216
489141
-
Phe
GAA
[ENA]
¡û
>W1710877801
LMQK01000023
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
132351
132426
+
Phe
GAA
[ENA]
¡û
>W1710878619
LMRC01000012
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
132325
132400
+
Phe
GAA
[ENA]
¡û
>W1710879199
LMRM01000029
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
5556
5631
+
Phe
GAA
[ENA]
¡û
>W1710882973
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
908302
908377
+
Phe
GAA
[ENA]
¡û
>W1710891426
LNCU01000107
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
239842
239917
+
Phe
GAA
[ENA]
¡û
>W1710893547
LNEW01000078
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
51314
51239
-
Phe
GAA
[ENA]
¡û
>W1710893681
LNEZ01000090
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
13530
13455
-
Phe
GAA
[ENA]
¡û
>W1710893939
LNFG01000025
Alphaproteobacteria
Rhizobiales bacterium Ga0077555 [LNFG]
77
2
-
Phe
GAA
[ENA]
¡û
>W131180163
ARMX01000036
Alphaproteobacteria
Novispirillum itersonii subsp. itersonii ATCC 12639 [ARMX]
26016
26091
+
Phe
GAA
[ENA]
¡û
>W131180164
ARMX01000036
Alphaproteobacteria
Novispirillum itersonii subsp. itersonii ATCC 12639 [ARMX]
26226
26301
+
Phe
GAA
[ENA]
¡û
>W1711188858
LWQU01000194
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
7518
7593
+
Phe
GAA
[ENA]
¡û
>W1711228844
LXWX01000068
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
70479
70554
+
Phe
GAA
[ENA]
¡û
>W1711475546
MJUX01000001
Alphaproteobacteria
Acuticoccus yangtzensis [MJUX]
780098
780173
+
Phe
GAA
[ENA]
¡û
>W1711501619
MKRV01000052
Alphaproteobacteria
Alphaproteobacteria bacterium 65-37 [MKRV]
19003
18928
-
Phe
GAA
[ENA]
¡û
>W1711571757
MNAO01000150
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
8160
8235
+
Phe
GAA
[ENA]
¡û
>W1712049599
NFUH01000116
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
13231
13156
-
Phe
GAA
[ENA]
¡û
>C171021090
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
1430957
1431032
+
Phe
GAA
-
¡û
>W131094252
AONQ01000028
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
5593
5668
+
Phe
GAA
[ENA]
¡û
>W131225078
AUDH01000004
Alphaproteobacteria
Rubritepida flocculans DSM 14296 [AUDH]
207007
206932
-
Phe
GAA
[ENA]
¡û
>WENV180027935
FTIZ01300543
[FTIZ] metagenome; soil
105
30
-
Phe
GAA
[ENA]
¢þ
>WENV181166434
OEIU01000301
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
34144
34219
+
Phe
GAA
[ENA]
¢þ
>WENV181166548
OEIU01000583
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
16051
15976
-
Phe
GAA
[ENA]
¢þ
>WENV181166632
OEIU01000877
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
23144
23069
-
Phe
GAA
[ENA]
¢þ
>WENV181166729
OEIU01001417
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1165
1240
+
Phe
GAA
[ENA]
¢þ
>WENV181166827
OEIU01002822
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6868
6793
-
Phe
GAA
[ENA]
¢þ
>WENV181166885
OEIU01003798
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6746
6671
-
Phe
GAA
[ENA]
¢þ
>WENV181167370
OEIU01022973
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1
76
+
Phe
GAA
[ENA]
¢þ
>WENV181167393
OEIU01025026
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1041
966
-
Phe
GAA
[ENA]
¢þ
>WENV181168128
OEIU01173680
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
452
527
+
Phe
GAA
[ENA]
¢þ
>WENV181169527
OEIV010003640
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3656
3581
-
Phe
GAA
[ENA]
¢þ
>WENV181234377
OFEU01000078
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
88553
88478
-
Phe
GAA
[ENA]
¢þ
>W08002398
ABEX01000005
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
20568
20643
+
Phe
GAA
[ENA]
¡û
>C08000298
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
1710750
1710825
+
Phe
GAA
[Ensembl]
¡û
>C08006429
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
5139098
5139173
+
Phe
GAA
[Ensembl]
¡û
>WENV183725955
PJQF01047608
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
464
389
-
Phe
GAA
[ENA]
¢þ
>WENV170000106
AERA01011478
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
76
1
-
Phe
GAA
[ENA]
¢þ
>WENV170011272
APMI01053438
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
835
910
+
Phe
GAA
[ENA]
¢þ
>WENV170011273
APMI01053439
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
410
485
+
Phe
GAA
[ENA]
¢þ
>WENV170011545
APMI01073277
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3485
3410
-
Phe
GAA
[ENA]
¢þ
>WENV170012124
APMI01122665
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
405
330
-
Phe
GAA
[ENA]
¢þ
>WENV170649382
JRYC01003693
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
6742
6667
-
Phe
GAA
[ENA]
¢þ
>WENV170653168
JRYI01009285
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
9577
9652
+
Phe
GAA
[ENA]
¢þ
>WENV170653378
JRYI01129305
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
357
432
+
Phe
GAA
[ENA]
¢þ
>WENV170680778
LFEF01021149
[LFEF] freshwater metagenome; waterbloom
271
196
-
Phe
GAA
[ENA]
¢þ
>WENV170680834
LFEF01026130
[LFEF] freshwater metagenome; waterbloom
494
419
-
Phe
GAA
[ENA]
¢þ
>WENV170709159
LNFM01000141
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
109047
109122
+
Phe
GAA
[ENA]
¢þ
>WENV170710001
LNFM01001035
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
54742
54667
-
Phe
GAA
[ENA]
¢þ
>WENV170710239
LNFM01001357
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
34503
34578
+
Phe
GAA
[ENA]
¢þ
>WENV170710271
LNFM01001421
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
60678
60753
+
Phe
GAA
[ENA]
¢þ
>WENV170711466
LNFM01005368
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6103
6028
-
Phe
GAA
[ENA]
¢þ
>WENV170711896
LNFM01008181
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12034
11959
-
Phe
GAA
[ENA]
¢þ
>WENV170713642
LNFM01037214
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2913
2838
-
Phe
GAA
[ENA]
¢þ
>WENV170713876
LNFM01045294
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2207
2132
-
Phe
GAA
[ENA]
¢þ
>WENV170973089
MTKY01011945
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
480
555
+
Phe
GAA
[ENA]
¢þ
>C181041865
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
4915023
4914948
-
Phe
GAA
-
¡û
>C191071709
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
1086663
1086738
+
Phe
GAA
-
¡û
>W141561199
JHYG01000007
Alphaproteobacteria
Acidocella facilis ATCC 35904 [JHYG]
105721
105796
+
Phe
GAA
[ENA]
¡û
>W141702939
JMLV01000004
Alphaproteobacteria
Fodinicurvata fenggangensis DSM 21160 [JMLV]
251523
251598
+
Phe
GAA
[ENA]
¡û
>W141779098
JONN01000001
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
1673671
1673746
+
Phe
GAA
[ENA]
¡û
>C141010527
CP006912
Alphaproteobacteria
Hyphomicrobium nitrativorans NL23 [CP006912]
65323
65248
-
Phe
GAA
[Ensembl]
¡û
>W1910498959
FXXN01000020
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
142716
142641
-
Phe
GAA
[ENA]
¡û
>W1910635430
LNCQ01000056
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
6241
6166
-
Phe
GAA
[ENA]
¡û
>W1910840135
MZXT01000012
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
561522
561597
+
Phe
GAA
[ENA]
¡û
>W1911247260
NSLI01000003
Alphaproteobacteria
Sphingomonas lenta 1PNM-20 [NSLI]
447334
447260
-
Phe
GAA
[ENA]
¡û
>W1911629496
PSRR01000053
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
33293
33218
-
Phe
GAA
[ENA]
¡û
>W1810062051
PDNU01000009
Alphaproteobacteria
Pseudoroseomonas rhizosphaerae YW11 [PDNU]
2788
2863
+
Phe
GAA
[ENA]
¡û
>W1810177490
PJRO01000005
Alphaproteobacteria
Mesorhizobium loti LU [PJRO]
290025
289950
-
Phe
GAA
[ENA]
¡û
>W1810672705
QJTP01000004
Alphaproteobacteria
Methylobacterium sp. GV094 [QJTP]
243107
243032
-
Phe
GAA
[ENA]
¡û
>C151066526
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
1430656
1430731
+
Phe
GAA
[Ensembl]
¡û
>C151086713
CP011805
Alphaproteobacteria
Pelagerythrobacter marensis KCTC 22370 [CP011805]
1186906
1186981
+
Phe
GAA
[Ensembl]
¡û
>W1510081370
CDSD01000083
Alphaproteobacteria
Microvirga massiliensis JC119 [CDSD]
74749
74824
+
Phe
GAA
[ENA]
¡û
>WENV11100464
AERA01011478
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
76
1
-
Phe
GAA
[ENA]
¡û
>W1510741125
CYHC01000004
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
1651
1576
-
Phe
GAA
[ENA]
¡û
>W1510973709
JGCL01000002
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
849081
849006
-
Phe
GAA
[ENA]
¡û
>W1511625939
LCZM01000176
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
18576
18501
-
Phe
GAA
[ENA]
¡û
>C161108385
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
4203728
4203803
+
Phe
GAA
-
¡û
>W121010671
AGJK01000057
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
17575
17650
+
Phe
GAA
[ENA]
¡û
>W121009581
AGEZ01000097
Alphaproteobacteria
Acetobacteraceae bacterium AT-5844 [AGEZ]
12564
12489
-
Phe
GAA
[ENA]
¡û
>W1610735337
LMML01000006
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
1748
1823
+
Phe
GAA
[ENA]
¡û
>W1610735442
LMMN01000012
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
103025
102950
-
Phe
GAA
[ENA]
¡û
>W1610735569
LMMQ01000008
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
489216
489141
-
Phe
GAA
[ENA]
¡û
>W1610740147
LMQK01000023
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
132351
132426
+
Phe
GAA
[ENA]
¡û
>W1610740965
LMRC01000012
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
132325
132400
+
Phe
GAA
[ENA]
¡û
>W1610741545
LMRM01000029
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
5556
5631
+
Phe
GAA
[ENA]
¡û
>W1610744899
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
908302
908377
+
Phe
GAA
[ENA]
¡û
>W1610751791
LNCU01000107
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
239842
239917
+
Phe
GAA
[ENA]
¡û
>W1610753813
LNEW01000078
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
51314
51239
-
Phe
GAA
[ENA]
¡û
>W1610753947
LNEZ01000090
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
13530
13455
-
Phe
GAA
[ENA]
¡û
>W1610754205
LNFG01000025
Alphaproteobacteria
Rhizobiales bacterium Ga0077555 [LNFG]
77
2
-
Phe
GAA
[ENA]
¡û
>W1610990977
LWQU01000194
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
7518
7593
+
Phe
GAA
[ENA]
¡û
>W1611012761
LXWX01000068
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
70479
70554
+
Phe
GAA
[ENA]
¡û
>W1710513038
FMZW01000004
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
37804
37879
+
Phe
GAA
[ENA]
¡û
>W1710540653
FNWZ01000001
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
964120
964045
-
Phe
GAA
[ENA]
¡û
>W1710593766
FRXO01000002
Alphaproteobacteria
Pseudoxanthobacter soli DSM 19599 [FRXO]
378332
378407
+
Phe
GAA
[ENA]
¡û
>W1710607267
FWZX01000050
Alphaproteobacteria
Tistlia consotensis [FWZX]
1971
1896
-
Phe
GAA
[ENA]
¡û
>W1710609188
FXWG01000001
Alphaproteobacteria
Altererythrobacter xiamenensis [FXWG]
406375
406450
+
Phe
GAA
[ENA]
¡û
>W1710735621
LGHL01000045
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
19843
19768
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK