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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243633 (17 seq.)
>W131231157
AUIF01000050
Bacteroidota
Runella zeae DSM 19591 [AUIF]
3142
3219
+
Pro
TGG
[ENA]
¡û
>W141168920
AXVJ01000012
Bacteroidota
Runella limosa DSM 17973 [AXVJ]
124047
123970
-
Pro
TGG
[ENA]
¡û
>W141168944
AXVJ01000063
Bacteroidota
Runella limosa DSM 17973 [AXVJ]
69132
69055
-
Pro
TGG
[ENA]
¡û
>WENV170011880
APMI01098654
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
10276
10199
-
Pro
TGG
[ENA]
¢þ
>C181090253
CP023777
Bacteroidota
Chitinophaga caeni 13 [CP023777]
553808
553733
-
Pro
TGG
-
¡û
>C181193406
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
107672
107747
+
Pro
TGG
-
¡û
>C181193426
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
5965651
5965726
+
Pro
TGG
-
¡û
>C191073375
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
1311185
1311260
+
Pro
TGG
-
¡û
>C191073394
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
5812474
5812399
-
Pro
TGG
-
¡û
>W1911787363
QXZY01000012
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
85250
85325
+
Pro
TGG
[ENA]
¡û
>W1810532604
QCYL01000002
Bacteroidota
Chitinophaga costaii A37T2 [QCYL]
426870
426795
-
Pro
TGG
[ENA]
¡û
>W1810758674
QPIW01000001
Bacteroidota
Runella aurantiaca YX9 [QPIW]
260397
260472
+
Pro
TGG
[ENA]
¡û
>W1810758694
QPIW01000013
Bacteroidota
Runella aurantiaca YX9 [QPIW]
176635
176560
-
Pro
TGG
[ENA]
¡û
>C11118890
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
5963281
5963206
-
Pro
TGG
[Ensembl]
¡û
>C11118908
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
240277
240202
-
Pro
TGG
[Ensembl]
¡û
>W1610514956
FMAR01000003
Bacteroidota
Chitinophaga costaii [FMAR]
27222
27297
+
Pro
TGG
[ENA]
¡û
>W1710500646
FMAR01000003
Bacteroidota
Chitinophaga costaii [FMAR]
27222
27297
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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