This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243637 (51 seq.)
>W1710783838
LJFZ01000053
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
17680
17755
+
His
GTG
[ENA]
¡û
>W1710787582
LJJX01000039
Actinomycetota
Frankia sp. CpI1-P [LJJX]
50488
50413
-
His
GTG
[ENA]
¡û
>W1710793207
LJPA01000008
Actinomycetota
Frankia sp. ACN1ag [LJPA]
213136
213211
+
His
GTG
[ENA]
¡û
>W1710881178
LMSW01000012
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
162318
162243
-
His
GTG
[ENA]
¡û
>W1710881217
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
239002
238927
-
His
GTG
[ENA]
¡û
>W1711053924
LRTJ01000077
Actinomycetota
Frankia casuarinae BR [LRTJ]
3177
3252
+
His
GTG
[ENA]
¡û
>W1711309664
MAQZ01000076
Actinomycetota
Frankia sp. CgIM4 [MAQZ]
2950
3025
+
His
GTG
[ENA]
¡û
>W1711329012
MBLP01000076
Actinomycetota
Frankia sp. CgIS1 [MBLP]
3002
3077
+
His
GTG
[ENA]
¡û
>W1711603577
MOMD01000056
Actinomycetota
Frankia sp. CcI156 [MOMD]
2970
3045
+
His
GTG
[ENA]
¡û
>W1711678695
MRUJ01000166
Actinomycetota
Frankia sp. KB5 [MRUJ]
27447
27372
-
His
GTG
[ENA]
¡û
>W1711689407
MSEA01000298
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
16153
16078
-
His
GTG
[ENA]
¡û
>C171033889
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
1481647
1481572
-
His
GTG
-
¡û
>C171045497
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
1476834
1476759
-
His
GTG
-
¡û
>C171045544
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
1464921
1464846
-
His
GTG
-
¡û
>C009380
CT573213
Actinomycetota
Frankia alni ACN14a [CT573213]
1890931
1890856
-
His
GTG
[Ensembl]
¡û
>C009578
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
1235993
1235918
-
His
GTG
[Ensembl]
¡û
>C015216
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
1429015
1428940
-
His
GTG
[Ensembl]
¡û
>WENV180019982
FTCS01003813
[FTCS] metagenome; soil
1360
1435
+
His
GTG
[ENA]
¢þ
>WENV180291652
OBIV01120765
[OBIV] soil metagenome; Clay
416
341
-
His
GTG
[ENA]
¢þ
>WENV180692427
OCZS010530068
[OCZS] soil metagenome; soil
264
339
+
His
GTG
[ENA]
¢þ
>W141195311
AYTZ01000043
Actinomycetota
Frankia sp. CcI6 [AYTZ]
41672
41597
-
His
GTG
[ENA]
¡û
>W141218648
AZWL01000012
Actinomycetota
Streptomyces sp. CNH099 [AZWL]
5603
5530
-
His
GTG
[ENA]
¡û
>W141402074
JDUZ01000005
Actinomycetota
Streptomyces sp. PCS3-D2 [JDUZ]
182270
182197
-
His
GTG
[ENA]
¡û
>W141403452
JDWE01000050
Actinomycetota
Frankia sp. BMG5.23 [JDWE]
3445
3520
+
His
GTG
[ENA]
¡û
>W141427374
JENI01000056
Actinomycetota
Frankia casuarinae Thr [JENI]
23079
23004
-
His
GTG
[ENA]
¡û
>C181067277
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
1429953
1429878
-
His
GTG
-
¡û
>C181109890
CP024985
Actinomycetota
Streptomyces lavendulae subsp. lavendulae CCM 3239 [CP024985]
2292009
2292082
+
His
GTG
-
¡û
>W141564766
JIBA01000002
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
38145
38070
-
His
GTG
[ENA]
¡û
>W09102708
AAIE01000021
Actinomycetota
Frankia casuarinae CcI3 [AAIE]
40811
40886
+
His
GTG
[ENA]
¡û
>W141770811
JOGT01000013
Actinomycetota
Streptomyces sp. NRRL S-1831 [JOGT]
159522
159595
+
His
GTG
[ENA]
¡û
>W141803602
JPGU01000044
Actinomycetota
Frankia sp. CeD [JPGU]
3093
3168
+
His
GTG
[ENA]
¡û
>W141804408
JPHT01000035
Actinomycetota
Frankia sp. Allo2 [JPHT]
3133
3208
+
His
GTG
[ENA]
¡û
>W1910546337
FZMO01000100
Actinomycetota
Frankia canadensis ARgP5 [FZMO]
7349
7274
-
His
GTG
[ENA]
¡û
>W1911504302
OESX01000100
Actinomycetota
Frankia canadensis ARgP5 [OESX]
7349
7274
-
His
GTG
[ENA]
¡û
>W1911766144
QXDI01000001
Actinomycetota
Streptomyces sp. 3211.1 [QXDI]
5143350
5143277
-
His
GTG
[ENA]
¡û
>W10111522
ADDL01000001
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
4297
4372
+
His
GTG
[ENA]
¡û
>C11109207
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
6402477
6402552
+
His
GTG
[Ensembl]
¡û
>W11114449
ADDL01000001
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
4297
4372
+
His
GTG
[ENA]
¡û
>W1511524742
JYFN01000036
Actinomycetota
Frankia torreyi CpI1-S [JYFN]
21441
21516
+
His
GTG
[ENA]
¡û
>W1511573841
LANG01000011
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
197271
197196
-
His
GTG
[ENA]
¡û
>W1511697999
LGEH01000117
Actinomycetota
Streptomyces sp. NRRL F-7442 [LGEH]
41841
41914
+
His
GTG
[ENA]
¡û
>W121069962
AJWA01000059
Actinomycetota
Frankia sp. QA3 [AJWA]
16091
16166
+
His
GTG
[ENA]
¡û
>W1610053398
BBOK01000002
Actinomycetota
Streptomyces sp. NBRC 110030 [BBOK]
254623
254550
-
His
GTG
[ENA]
¡û
>W1610648346
LJFZ01000053
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
17680
17755
+
His
GTG
[ENA]
¡û
>W1610651437
LJJX01000039
Actinomycetota
Frankia sp. CpI1-P [LJJX]
50488
50413
-
His
GTG
[ENA]
¡û
>W1610657211
LJPA01000008
Actinomycetota
Frankia sp. ACN1ag [LJPA]
213136
213211
+
His
GTG
[ENA]
¡û
>W1610743524
LMSW01000012
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
162318
162243
-
His
GTG
[ENA]
¡û
>W1610743563
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
239002
238927
-
His
GTG
[ENA]
¡û
>W1610895112
LRTJ01000077
Actinomycetota
Frankia casuarinae BR [LRTJ]
3177
3252
+
His
GTG
[ENA]
¡û
>W1710049776
BBOK01000002
Actinomycetota
Streptomyces sp. NBRC 110030 [BBOK]
254623
254550
-
His
GTG
[ENA]
¡û
>W1710550125
FOFA01000002
Actinomycetota
Microlunatus flavus flava [FOFA]
301958
301883
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK