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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243641 (50 seq.)
>W1711326608
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
647112
647187
+
Val
TAC
[ENA]
¡û
>W1711504166
MKUH01000018
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
118861
118936
+
Val
TAC
[ENA]
¡û
>C171085183
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
3125088
3125013
-
Val
TAC
-
¡û
>WENV180099442
NMRC01004697
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
995
920
-
Val
TAC
[ENA]
¢þ
>WENV180272743
OBEQ012412268
[OBEQ] groundwater metagenome; groundwater
450
375
-
Val
TAC
[ENA]
¢þ
>WENV180728465
ODGU01051875
[ODGU] human metagenome; G_DNA_Supragingival plaque
200
125
-
Val
TAC
[ENA]
¢þ
>WENV180847379
ODKT01071475
[ODKT] human metagenome; G_DNA_Supragingival plaque
122
47
-
Val
TAC
[ENA]
¢þ
>WENV180943700
ODUC01001805
[ODUC] human metagenome; G_DNA_Supragingival plaque
10414
10489
+
Val
TAC
[ENA]
¢þ
>WENV181009757
ODWE01192113
[ODWE] human metagenome; G_DNA_Supragingival plaque
167
241
+
Val
TAC
[ENA]
¢þ
>WENV181077413
OEAP01052865
[OEAP] human metagenome; G_DNA_Supragingival plaque
157
82
-
Val
TAC
[ENA]
¢þ
>WENV181092150
OEBC01278667
[OEBC] human metagenome; G_DNA_Supragingival plaque
111
186
+
Val
TAC
[ENA]
¢þ
>WENV170009337
APMI01000099
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
142842
142917
+
Val
TAC
[ENA]
¢þ
>W141401156
JDSS02000016
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
121958
121883
-
Val
TAC
[ENA]
¡û
>W141401213
JDST02000083
Betaproteobacteria
Candidatus Accumulibacter cognatus sp. SK-02 [JDST]
31411
31486
+
Val
TAC
[ENA]
¡û
>W141426830
JEMY01000037
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
5962
5887
-
Val
TAC
[ENA]
¡û
>W141426858
JEMZ01000202
Betaproteobacteria
Candidatus Accumulibacter sp. BA-94 [JEMZ]
11519
11594
+
Val
TAC
[ENA]
¡û
>WENV170551345
CXWJ01005130
[CXWJ] wastewater metagenome; activated sludge
4546
4471
-
Val
TAC
[ENA]
¢þ
>WENV170639311
JFJP01001838
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
22739
22814
+
Val
TAC
[ENA]
¢þ
>WENV170650303
JRYD01056012
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
947
1022
+
Val
TAC
[ENA]
¢þ
>WENV170650617
JRYE01006883
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
200
125
-
Val
TAC
[ENA]
¢þ
>WENV170651723
JRYG01000890
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
61501
61576
+
Val
TAC
[ENA]
¢þ
>WENV170653094
JRYI01003006
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
75
1
-
Val
TAC
[ENA]
¢þ
>WENV170653545
JRYJ01005171
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
3147
3072
-
Val
TAC
[ENA]
¢þ
>WENV170657929
JTFP01034725
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
202
277
+
Val
TAC
[ENA]
¢þ
>W141451285
JFAW01000047
Betaproteobacteria
Candidatus Accumulibacter sp. SK-11 [JFAW]
4602
4527
-
Val
TAC
[ENA]
¡û
>W141451317
JFAX01000028
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
39499
39574
+
Val
TAC
[ENA]
¡û
>C181042981
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
1154993
1155068
+
Val
TAC
-
¡û
>C181081454
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
1866768
1866843
+
Val
TAC
-
¡û
>C181164186
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
2855602
2855527
-
Val
TAC
-
¡û
>C181165143
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
1064655
1064730
+
Val
TAC
-
¡û
>C181176815
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
1923177
1923102
-
Val
TAC
-
¡û
>W1810005478
BFBP01000003
Betaproteobacteria
Azospira sp. I13 [BFBP]
65432
65507
+
Val
TAC
[ENA]
¡û
>C10101110
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
2591406
2591481
+
Val
TAC
[Ensembl]
¡û
>W11114414
ADDK02000002
Betaproteobacteria
Azospira oryzae PS [ADDK]
210474
210549
+
Val
TAC
[ENA]
¡û
>W1511592940
LBIU01000144
Betaproteobacteria
Candidatus Accumulibacter adiacens phosphatis [LBIU]
8010
8085
+
Val
TAC
[ENA]
¡û
>W1511592969
LBIV01000060
Betaproteobacteria
Candidatus Accumulibacter phosphatis [LBIV]
8878
8803
-
Val
TAC
[ENA]
¡û
>C121006942
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
2336952
2337027
+
Val
TAC
[Ensembl]
¡û
>W1610506445
FLQX01000173
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
22824
22899
+
Val
TAC
[ENA]
¡û
>W1610506481
FLQY01000249
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
297
372
+
Val
TAC
[ENA]
¡û
>W1610506486
FLQY01000345
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
264
189
-
Val
TAC
[ENA]
¡û
>W1611063344
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
647112
647187
+
Val
TAC
[ENA]
¡û
>WENV079737
AATN01000099
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
4124
4049
-
Val
TAC
[ENA]
>WENV079978
AATO01000105
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1178
1103
-
Val
TAC
[ENA]
>WENV080057
AATO01002545
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
708
633
-
Val
TAC
[ENA]
>WENV080155
AATO01009355
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
472
397
-
Val
TAC
[ENA]
>W1710498948
FLQX01000173
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
22824
22899
+
Val
TAC
[ENA]
¡û
>W1710498984
FLQY01000249
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
297
372
+
Val
TAC
[ENA]
¡û
>W1710498989
FLQY01000345
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
264
189
-
Val
TAC
[ENA]
¡û
>W1710516940
FNCY01000005
Betaproteobacteria
Propionivibrio dicarboxylicus [FNCY]
232026
232101
+
Val
TAC
[ENA]
¡û
>W1710539455
FNVJ01000008
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
121859
121934
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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