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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243773 (28 seq.)
>W131086654
AOBT01000030
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
76712
76785
+
Gly
CCC
[ENA]
¡û
>C014501
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
6147430
6147502
+
Gly
CCC
[Ensembl]
¡û
>WENV183740770
PJUF01009455
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1194
1266
+
Gly
CCC
[ENA]
¢þ
>C181060641
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
6062746
6062819
+
Gly
CCC
-
¡û
>C191013137
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
6248923
6248996
+
Gly
CCC
-
¡û
>C191013202
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
6161829
6161902
+
Gly
CCC
-
¡û
>C191013268
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
5894059
5894132
+
Gly
CCC
-
¡û
>C191013333
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
6294081
6294154
+
Gly
CCC
-
¡û
>C191013398
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
6206405
6206478
+
Gly
CCC
-
¡û
>C191013463
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
6206400
6206473
+
Gly
CCC
-
¡û
>C191128693
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
2846802
2846729
-
Gly
CCC
-
¡û
>W141695189
JMCB01000008
Myxococcota
Hyalangium minutum [JMCB]
209986
210059
+
Gly
CCC
[ENA]
¡û
>W141695223
JMCC01000008
Myxococcota
Enhygromyxa salina [JMCC]
133028
132955
-
Gly
CCC
[ENA]
¡û
>W1911701608
QNUN01000013
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
202480
202407
-
Gly
CCC
[ENA]
¡û
>W1810452187
PZOX01000005
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
377186
377259
+
Gly
CCC
[ENA]
¡û
>C151008189
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
7652193
7652120
-
Gly
CCC
[Ensembl]
¡û
>C151091055
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
2309550
2309477
-
Gly
CCC
[Ensembl]
¡û
>C11114333
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
8009501
8009574
+
Gly
CCC
[Ensembl]
¡û
>C11119120
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
7036904
7036977
+
Gly
CCC
[Ensembl]
¡û
>C121012093
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
3030652
3030579
-
Gly
CCC
[Ensembl]
¡û
>W121102875
AKXT01000026
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
70006
69933
-
Gly
CCC
[ENA]
¡û
>W121103109
AKYI01000299
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
3019
3092
+
Gly
CCC
[ENA]
¡û
>C131011677
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
7030876
7030803
-
Gly
CCC
[Ensembl]
¡û
>W1710513735
FNAJ01000013
Myxococcota
Myxococcus virescens [FNAJ]
141715
141788
+
Gly
CCC
[ENA]
¡û
>W1710529836
FNOH01000023
Myxococcota
Myxococcus xanthus [FNOH]
76315
76388
+
Gly
CCC
[ENA]
¡û
>W1710544142
FOAP01000035
Myxococcota
Stigmatella aurantiaca [FOAP]
5623
5550
-
Gly
CCC
[ENA]
¡û
>W1710553991
FOIB01000006
Myxococcota
Myxococcus fulvus [FOIB]
424364
424437
+
Gly
CCC
[ENA]
¡û
>W1710554346
FOIJ01000007
Myxococcota
Stigmatella erecta [FOIJ]
165800
165873
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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