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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243838 (43 seq.)
>W1711091970
LTDO01000010
Gammaproteobacteria
Francisella orientalis subsp. orientalis [LTDO]
223343
223418
+
Lys
TTT
[ENA]
¡û
>W1711091971
LTDO01000010
Gammaproteobacteria
Francisella orientalis subsp. orientalis [LTDO]
223470
223545
+
Lys
TTT
[ENA]
¡û
>C171071964
CP018051
Gammaproteobacteria
Francisella orientalis F1 [CP018051]
637603
637678
+
Lys
TTT
-
¡û
>C171071965
CP018051
Gammaproteobacteria
Francisella orientalis F1 [CP018051]
637730
637805
+
Lys
TTT
-
¡û
>WENV180000133
CZVZ01002179
[CZVZ] metagenome; unknown
3504
3579
+
Lys
TTT
[ENA]
¢þ
>WENV180042526
LQAF01001420
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
31
106
+
Lys
TTT
[ENA]
¢þ
>C08005052
CP000937
Gammaproteobacteria
Francisella philomiragia [CP000937]
173150
173078
-
Lys
TTT
[Ensembl]
¡û
>C08005053
CP000937
Gammaproteobacteria
Francisella philomiragia [CP000937]
173023
172951
-
Lys
TTT
[Ensembl]
¡û
>C181060806
CP022207
Gammaproteobacteria
Francisella noatunensis [CP022207]
668190
668265
+
Lys
TTT
-
¡û
>C181060807
CP022207
Gammaproteobacteria
Francisella noatunensis [CP022207]
668317
668392
+
Lys
TTT
-
¡û
>W09113789
ABYY01000019
Gammaproteobacteria
Francisella philomiragia subsp. philomiragia ATCC 25015 [ABYY]
55587
55512
-
Lys
TTT
[ENA]
¡û
>W09113790
ABYY01000019
Gammaproteobacteria
Francisella philomiragia subsp. philomiragia ATCC 25015 [ABYY]
55460
55385
-
Lys
TTT
[ENA]
¡û
>W141789929
JOUE01000003
Gammaproteobacteria
Francisella philomiragia [JOUE]
359492
359567
+
Lys
TTT
[ENA]
¡û
>W141789930
JOUE01000003
Gammaproteobacteria
Francisella philomiragia [JOUE]
359619
359694
+
Lys
TTT
[ENA]
¡û
>C141010040
CP006875
Gammaproteobacteria
Francisella orientalis LADL 07-285A LADL--07-285A [CP006875]
697358
697433
+
Lys
TTT
[Ensembl]
¡û
>C141010041
CP006875
Gammaproteobacteria
Francisella orientalis LADL 07-285A LADL--07-285A [CP006875]
697485
697560
+
Lys
TTT
[Ensembl]
¡û
>W1810779420
QQOH01000001
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
266084
266159
+
Lys
TTT
[ENA]
¡û
>W1810779462
QQOH01000006
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
139479
139404
-
Lys
TTT
[ENA]
¡û
>W1810779463
QQOH01000006
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
139366
139291
-
Lys
TTT
[ENA]
¡û
>C151049546
CP009343
Gammaproteobacteria
Francisella philomiragia O#319-029 [CP009343]
341094
341019
-
Lys
TTT
[Ensembl]
¡û
>C151049547
CP009343
Gammaproteobacteria
Francisella philomiragia O#319-029 [CP009343]
340967
340892
-
Lys
TTT
[Ensembl]
¡û
>C151050970
CP009436
Gammaproteobacteria
Francisella philomiragia O#319-067 [CP009436]
1251501
1251576
+
Lys
TTT
[Ensembl]
¡û
>C151050971
CP009436
Gammaproteobacteria
Francisella philomiragia O#319-067 [CP009436]
1251628
1251703
+
Lys
TTT
[Ensembl]
¡û
>C151051068
CP009440
Gammaproteobacteria
Francisella philomiragia GA01-2794 [CP009440]
695516
695591
+
Lys
TTT
[Ensembl]
¡û
>C151051069
CP009440
Gammaproteobacteria
Francisella philomiragia GA01-2794 [CP009440]
695643
695718
+
Lys
TTT
[Ensembl]
¡û
>C151051100
CP009442
Gammaproteobacteria
Francisella philomiragia O#319-036 [FSC 153] [CP009442]
157758
157833
+
Lys
TTT
[Ensembl]
¡û
>C151051101
CP009442
Gammaproteobacteria
Francisella philomiragia O#319-036 [FSC 153] [CP009442]
157885
157960
+
Lys
TTT
[Ensembl]
¡û
>C151051162
CP009444
Gammaproteobacteria
Francisella philomiragia GA01-2801 [CP009444]
1752914
1752839
-
Lys
TTT
[Ensembl]
¡û
>C151051163
CP009444
Gammaproteobacteria
Francisella philomiragia GA01-2801 [CP009444]
1752787
1752712
-
Lys
TTT
[Ensembl]
¡û
>C151063464
CP010019
Gammaproteobacteria
Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L [CP010019]
1957640
1957715
+
Lys
TTT
[Ensembl]
¡û
>C151063465
CP010019
Gammaproteobacteria
Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L [CP010019]
1957767
1957842
+
Lys
TTT
[Ensembl]
¡û
>C151087369
CP011921
Gammaproteobacteria
Francisella orientalis FNO12 [CP011921]
637673
637748
+
Lys
TTT
[Ensembl]
¡û
>C151087370
CP011921
Gammaproteobacteria
Francisella orientalis FNO12 [CP011921]
637800
637875
+
Lys
TTT
[Ensembl]
¡û
>C151087406
CP011922
Gammaproteobacteria
Francisella orientalis FNO24 [CP011922]
637623
637698
+
Lys
TTT
[Ensembl]
¡û
>C151087407
CP011922
Gammaproteobacteria
Francisella orientalis FNO24 [CP011922]
637750
637825
+
Lys
TTT
[Ensembl]
¡û
>C151087442
CP011923
Gammaproteobacteria
Francisella orientalis FNO190 [CP011923]
637616
637691
+
Lys
TTT
[Ensembl]
¡û
>C151087443
CP011923
Gammaproteobacteria
Francisella orientalis FNO190 [CP011923]
637743
637818
+
Lys
TTT
[Ensembl]
¡û
>C151091878
CP012153
Gammaproteobacteria
Francisella orientalis FNO01 [CP012153]
637727
637802
+
Lys
TTT
-
¡û
>C151091879
CP012153
Gammaproteobacteria
Francisella orientalis FNO01 [CP012153]
637854
637929
+
Lys
TTT
-
¡û
>C121012430
CP003402
Gammaproteobacteria
Francisella orientalis str. Toba 04 [CP003402]
1248765
1248840
+
Lys
TTT
[Ensembl]
¡û
>C121012431
CP003402
Gammaproteobacteria
Francisella orientalis str. Toba 04 [CP003402]
1248892
1248967
+
Lys
TTT
[Ensembl]
¡û
>W1610926066
LTDO01000010
Gammaproteobacteria
Francisella orientalis subsp. orientalis [LTDO]
223343
223418
+
Lys
TTT
[ENA]
¡û
>W1610926067
LTDO01000010
Gammaproteobacteria
Francisella orientalis subsp. orientalis [LTDO]
223470
223545
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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