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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243847 (19 seq.)
>W1711124496
LUKD01000008
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
546731
546656
-
Glu
TTC
[ENA]
¡û
>W1711124531
LUKE01000005
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
24742
24667
-
Glu
TTC
[ENA]
¡û
>W1711124539
LUKF01000003
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
26157
26232
+
Glu
TTC
[ENA]
¡û
>W1712010627
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
292266
292341
+
Glu
TTC
[ENA]
¡û
>C001988
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
1380844
1380769
-
Glu
TTC
[Ensembl]
¡û
>WENV181172347
OEIV010614522
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
133
208
+
Glu
TTC
[ENA]
¢þ
>C191037161
CP025734
Bdellovibrionota
Bdellovibrio sp. qaytius [CP025734]
1296410
1296335
-
Glu
TTC
-
¡û
>W1910698852
MEPU01000004
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29 [MEPU]
293058
293133
+
Glu
TTC
[ENA]
¡û
>W1910698906
MEPV01000025
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_02_FULL_40_15 [MEPV]
293002
293077
+
Glu
TTC
[ENA]
¡û
>SRA1004247
SRR002328.221836
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
200
125
-
Glu
TTC
[SRA]
>C151003376
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
1027404
1027329
-
Glu
TTC
[Ensembl]
¡û
>C151031150
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
741004
740929
-
Glu
TTC
[Ensembl]
¡û
>C151087502
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
1346548
1346473
-
Glu
TTC
-
¡û
>W1511399674
JTEV01000021
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
151033
151108
+
Glu
TTC
[ENA]
¡û
>C131001675
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
1535191
1535116
-
Glu
TTC
[Ensembl]
¡û
>C131004036
CP003537
Bdellovibrionota
Pseudobdellovibrio exovorus JSS [CP003537]
1740098
1740173
+
Glu
TTC
[Ensembl]
¡û
>W1610935436
LUKD01000008
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
546731
546656
-
Glu
TTC
[ENA]
¡û
>W1610935471
LUKE01000005
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
24742
24667
-
Glu
TTC
[ENA]
¡û
>W1610935479
LUKF01000003
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
26157
26232
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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