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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243897 (69 seq.)
>PL171000069
AP014705
Alphaproteobacteria
Methylobacterium aquaticum MA-22A plasmid:pMaq22A_1p
831853
831778
-
Ala
TGC
[ENA]
¡û
>W131163753
ARAA01000018
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
121927
122002
+
Ala
TGC
[ENA]
¡û
>W131163763
ARAA01000022
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
172678
172603
-
Ala
TGC
[ENA]
¡û
>W131163766
ARAA01000024
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
120515
120440
-
Ala
TGC
[ENA]
¡û
>W131163773
ARAA01000031
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
314655
314730
+
Ala
TGC
[ENA]
¡û
>W131163781
ARAA01000039
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
183356
183431
+
Ala
TGC
[ENA]
¡û
>W131163807
ARAA01000079
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
273007
272932
-
Ala
TGC
[ENA]
¡û
>W131163832
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
3171296
3171371
+
Ala
TGC
[ENA]
¡û
>w026510
ABAY01000560
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
956
1031
+
Ala
TGC
[ENA]
¡û
>w026496
ABAY01000279
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
5043
5118
+
Ala
TGC
[ENA]
¡û
>w026494
ABAY01000263
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
1802
1730
-
Ala
TGC
[ENA]
¡û
>WENV180636210
OCRE01087387
[OCRE] marine metagenome; Seawater
267
192
-
Ala
TGC
[ENA]
¢þ
>W08006166
ABIP01000058
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
23522
23450
-
Ala
TGC
[ENA]
¡û
>WENV181123013
OEFO01032649
[OEFO] soil metagenome; soil
198
123
-
Ala
TGC
[ENA]
¢þ
>WENV181227794
OFDN01044154
[OFDN] hot springs metagenome; Water
890
815
-
Ala
TGC
[ENA]
¢þ
>C08006433
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
5909984
5910059
+
Ala
TGC
[Ensembl]
¡û
>C08006438
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
6815876
6815951
+
Ala
TGC
[Ensembl]
¡û
>C08006456
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
5114289
5114217
-
Ala
TGC
[Ensembl]
¡û
>C08006466
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
2836647
2836575
-
Ala
TGC
[Ensembl]
¡û
>WENV170182721
CEOY01004679
[CEOY] marine metagenome genome assembly TARA_056_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
796
721
-
Ala
TGC
[ENA]
¢þ
>WENV170187847
CEPA01293561
[CEPA] marine metagenome genome assembly TARA_052_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
227
302
+
Ala
TGC
[ENA]
¢þ
>WENV170469686
CEVF01134677
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1554
1629
+
Ala
TGC
[ENA]
¢þ
>WENV170588819
FUFK010595292
[FUFK] metagenome; unknown
706
631
-
Ala
TGC
[ENA]
¢þ
>WENV170849739
MDTA01101466
[MDTA] marine metagenome; seawater
5817
5742
-
Ala
TGC
[ENA]
¢þ
>C181180084
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
829466
829541
+
Ala
TGC
-
¡û
>C181180088
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
1216567
1216642
+
Ala
TGC
-
¡û
>C181180098
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
2246935
2247010
+
Ala
TGC
-
¡û
>C181180119
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
5409984
5410059
+
Ala
TGC
-
¡û
>C181180133
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4094540
4094465
-
Ala
TGC
-
¡û
>C181180135
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4030221
4030146
-
Ala
TGC
-
¡û
>C181180139
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
3207939
3207864
-
Ala
TGC
-
¡û
>C181180144
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
2579921
2579846
-
Ala
TGC
-
¡û
>C181180155
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
1741219
1741144
-
Ala
TGC
-
¡û
>C181180162
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
881258
881183
-
Ala
TGC
-
¡û
>C181180169
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
21763
21688
-
Ala
TGC
-
¡û
>C181180183
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
1356118
1356193
+
Ala
TGC
-
¡û
>C181180185
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
1508102
1508177
+
Ala
TGC
-
¡û
>C181180187
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
2176934
2177009
+
Ala
TGC
-
¡û
>C181180196
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
3304590
3304665
+
Ala
TGC
-
¡û
>C181180205
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
4835681
4835756
+
Ala
TGC
-
¡û
>C181180232
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
3244354
3244279
-
Ala
TGC
-
¡û
>C181180242
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
1750597
1750522
-
Ala
TGC
-
¡û
>C181180246
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
1389706
1389631
-
Ala
TGC
-
¡û
>C181180254
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
20891
20816
-
Ala
TGC
-
¡û
>C09107826
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
2191829
2191904
+
Ala
TGC
[Ensembl]
¡û
>C09107833
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
3804643
3804718
+
Ala
TGC
[Ensembl]
¡û
>C09107836
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
3830125
3830200
+
Ala
TGC
[Ensembl]
¡û
>C09107841
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
4916230
4916305
+
Ala
TGC
[Ensembl]
¡û
>C09107844
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
6008945
6009020
+
Ala
TGC
[Ensembl]
¡û
>C09107848
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
6801579
6801654
+
Ala
TGC
[Ensembl]
¡û
>C09107881
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
209714
209639
-
Ala
TGC
[Ensembl]
¡û
>W1911708591
QOWC01000394
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
186
111
-
Ala
TGC
[ENA]
¡û
>W1511507865
JXOD01000035
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
3347
3272
-
Ala
TGC
[ENA]
¡û
>W1511563313
LABY01000145
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
3322
3247
-
Ala
TGC
[ENA]
¡û
>C161001123
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
386267
386342
+
Ala
TGC
[Ensembl]
¡û
>C161001135
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
1139071
1139146
+
Ala
TGC
[Ensembl]
¡û
>C161001154
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
4261747
4261822
+
Ala
TGC
[Ensembl]
¡û
>C161001156
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
4400870
4400945
+
Ala
TGC
[Ensembl]
¡û
>C161001162
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
4855825
4855900
+
Ala
TGC
[Ensembl]
¡û
>C161001165
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
4927540
4927615
+
Ala
TGC
[Ensembl]
¡û
>C161001176
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
4108565
4108490
-
Ala
TGC
[Ensembl]
¡û
>C161001184
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
3111003
3110928
-
Ala
TGC
[Ensembl]
¡û
>C161001187
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
3036601
3036526
-
Ala
TGC
[Ensembl]
¡û
>C161001200
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
18572
18497
-
Ala
TGC
[Ensembl]
¡û
>W1610590466
LDRL01000357
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
278
353
+
Ala
TGC
[ENA]
¡û
>W1610590484
LDRM01000027
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
3270
3195
-
Ala
TGC
[ENA]
¡û
>ENV000058
AB236005
Environmental sample from ENV division of INSDC
301
376
+
Ala
TGC
[ENA]
>W1710709746
LDRL01000357
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
278
353
+
Ala
TGC
[ENA]
¡û
>W1710709764
LDRM01000027
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
3270
3195
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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