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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24392 (7 seq.)
>WENV181170920
OEIV010111916
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
344
434
+
Ser
TGA
[ENA]
¢þ
>WENV181855588
OGWL01040327
[OGWL] freshwater metagenome; freshwater
219
132
-
Ser
TGA
[ENA]
¢þ
>W141229846
BASK01001234
Chlamydiota
Neochlamydia sp. S13 [BASK]
46787
46873
+
Ser
TGA
[ENA]
¡û
>W141229857
BASK01001324
Chlamydiota
Neochlamydia sp. S13 [BASK]
49917
50003
+
Ser
TGA
[ENA]
¡û
>C191000781
AP017977
Chlamydiota
Neochlamydia sp. S13 [AP017977]
585604
585518
-
Ser
TGA
-
¡û
>W1511358796
JRXI01000133
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
18050
18136
+
Ser
TGA
[ENA]
¡û
>W1511364945
JSDQ01000049
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
7962
7876
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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