This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24397 (69 seq.)
>W1710809683
LKET01000021
Bacillota
Oxobacter pfennigii [LKET]
403117
403206
+
Ser
GGA
[ENA]
¡û
>W1710827069
LLES02000019
Bacillota
Clostridium sporogenes [LLES]
18040
18129
+
Ser
GGA
[ENA]
¡û
>W1710857171
LLZW02000025
Bacillota
Clostridium sporogenes [LLZW]
18040
18129
+
Ser
GGA
[ENA]
¡û
>W1711046921
LROR01000049
Bacillota
Clostridium coskatii [LROR]
62822
62911
+
Ser
GGA
[ENA]
¡û
>W1711116161
LUAU01000018
Bacillota
Clostridium sporogenes [LUAU]
18139
18228
+
Ser
GGA
[ENA]
¡û
>W131171195
ARGA01000063
Bacillota
Anaeromusa acidaminophila DSM 3853 [ARGA]
201119
201208
+
Ser
GGA
[ENA]
¡û
>W131203900
ASZX01000021
Bacillota
Clostridium autoethanogenum DSM 10061 [ASZX]
13065
12976
-
Ser
GGA
[ENA]
¡û
>W1711664631
MRAC01000019
Bacillota
Clostridium sporogenes [MRAC]
10985
10896
-
Ser
GGA
[ENA]
¡û
>W1711792182
MWJJ01000009
Bacillota
Clostridium sporogenes [MWJJ]
10849
10760
-
Ser
GGA
[ENA]
¡û
>W1711902917
MZGV01000003
Bacillota
Clostridium oryzae [MZGV]
109264
109353
+
Ser
GGA
[ENA]
¡û
>C171021859
CP013243
Bacillota
Clostridium sporogenes CDC_1632 [CP013243]
2312111
2312022
-
Ser
GGA
-
¡û
>W131111681
APMH01000032
Bacillota
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 [APMH]
11904
11815
-
Ser
GGA
[ENA]
¡û
>W131187048
ARYO01000048
Bacillota
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 [ARYO]
11903
11814
-
Ser
GGA
[ENA]
¡û
>W08008107
ABKW02000002
Bacillota
Clostridium sporogenes ATCC 15579 [ABKW]
25009
25098
+
Ser
GGA
[ENA]
¡û
>C08003379
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
3879595
3879509
-
Ser
GGA
[Ensembl]
¡û
>W141231570
BAUF01000004
Bacillota
Clostridium botulinum B str. Osaka05 [BAUF]
17921
18010
+
Ser
GGA
[ENA]
¡û
>W141258624
CBXI010000012
Bacillota
Clostridium tyrobutyricum DIVETGP [CBXI]
17891
17980
+
Ser
GGA
[ENA]
¡û
>WENV183791207
PPYF01427148
[PPYF] human gut metagenome; stool from patient with Crohn's disease
171
260
+
Ser
GGA
[ENA]
¢þ
>W141452006
JFBQ01000012
Bacillota
Clostridium sporogenes [JFBQ]
11123
11034
-
Ser
GGA
[ENA]
¡û
>C181012920
CP013242
Bacillota
Clostridium sporogenes CDC_67071 [CP013242]
3392431
3392342
-
Ser
GGA
-
¡û
>C181013433
CP013701
Bacillota
Clostridium sporogenes AM1195 [CP013701]
32962
33051
+
Ser
GGA
-
¡û
>C181159460
CP027775
Bacillota
Clostridium botulinum MFBjulcb1 [CP027775]
3910141
3910052
-
Ser
GGA
-
¡û
>C181159509
CP027776
Bacillota
Clostridium botulinum Mfbjulcb5 [CP027776]
4053937
4053848
-
Ser
GGA
-
¡û
>C181159695
CP027779
Bacillota
Clostridium botulinum RF5 [CP027779]
3862688
3862599
-
Ser
GGA
-
¡û
>C181159725
CP027780
Bacillota
Clostridium botulinum Mfbjulcb3 [CP027780]
32962
33051
+
Ser
GGA
-
¡û
>C181159816
CP027781
Bacillota
Clostridium botulinum MAP 5 [CP027781]
3851340
3851251
-
Ser
GGA
-
¡û
>C191037337
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
107903
107814
-
Ser
GGA
-
¡û
>C191065510
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
65044
65133
+
Ser
GGA
-
¡û
>C191089277
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
42980
43069
+
Ser
GGA
-
¡û
>C191106393
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
35035
35124
+
Ser
GGA
-
¡û
>W141557402
JHVC01000030
Bacillota
Clostridium lundense DSM 17049 [JHVC]
7331
7242
-
Ser
GGA
[ENA]
¡û
>W141702278
JMLJ01000015
Bacillota
Clostridium hydrogeniformans DSM 21757 [JMLJ]
10200
10111
-
Ser
GGA
[ENA]
¡û
>C141008091
CP006763
Bacillota
Clostridium autoethanogenum DSM 10061 [CP006763]
2342133
2342222
+
Ser
GGA
[Ensembl]
¡û
>C09103292
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
3811098
3811009
-
Ser
GGA
[Ensembl]
¡û
>W1911577096
PDLH01000007
Bacillota
Clostridium sporogenes FDAARGOS_423 [PDLH]
3596062
3595973
-
Ser
GGA
[ENA]
¡û
>W1911695226
QMBG01000025
Bacillota
Clostridium tetani 1240 [QMBG]
14035
13946
-
Ser
GGA
[ENA]
¡û
>W1911695456
QMBK01000020
Bacillota
Clostridium tetani Strain 3 [QMBK]
13978
13889
-
Ser
GGA
[ENA]
¡û
>W1911695504
QMBL01000016
Bacillota
Clostridium tetani Harvard [QMBL]
13928
13839
-
Ser
GGA
[ENA]
¡û
>W1810367553
PVXP01000030
Bacillota
Clostridium luticellarii DSM 29923 [PVXP]
11957
12046
+
Ser
GGA
[ENA]
¡û
>C151045857
CP009225
Bacillota
Clostridium sporogenes NCIMB 10696 [CP009225]
31920
32009
+
Ser
GGA
[Ensembl]
¡û
>C151085948
CP011663
Bacillota
Clostridium sporogenes DSM 795 [CP011663]
31920
32009
+
Ser
GGA
[Ensembl]
¡û
>C10103555
CP001666
Bacillota
Clostridium ljungdahlii DSM 13528 [CP001666]
79821
79910
+
Ser
GGA
[Ensembl]
¡û
>W1511187030
JMFY01000032
Bacillota
Clostridium sp. HMP27 [JMFY]
9008
8919
-
Ser
GGA
[ENA]
¡û
>W1511345258
JRGH01000017
Bacillota
Clostridium tetani ATCC 9441 [JRGH]
13876
13787
-
Ser
GGA
[ENA]
¡û
>W1511345303
JRGI01000009
Bacillota
Clostridium tetani ATCC 453 [JRGI]
14153
14242
+
Ser
GGA
[ENA]
¡û
>W1511399436
JTER01000021
Bacillota
Clostridium tyrobutyricum FAM22552 [JTER]
18094
18183
+
Ser
GGA
[ENA]
¡û
>W1511447232
JUYE01000196
Bacillota
Clostridium sporogenes 66_CBOT [JUYE]
12443
12354
-
Ser
GGA
[ENA]
¡û
>W1511544445
JZJP01000053
Bacillota
Clostridium sporogenes 87-0535 [JZJP]
7225
7314
+
Ser
GGA
[ENA]
¡û
>C161004223
CP006902
Bacillota
Clostridium botulinum Prevot_594 [CP006902]
2785796
2785885
+
Ser
GGA
[Ensembl]
¡û
>C161041753
CP012395
Bacillota
Clostridium autoethanogenum DSM 10061 [CP012395]
2342266
2342355
+
Ser
GGA
-
¡û
>W121007512
AGAH01000256
Bacillota
Clostridium sporogenes PA 3679 [AGAH]
31062
31151
+
Ser
GGA
[ENA]
¡û
>W1610165198
FAXL01000049
Bacillota
Clostridium tyrobutyricum [FAXL]
13676
13765
+
Ser
GGA
[ENA]
¡û
>W1610602525
LFPH01000017
Bacillota
Clostridium sporogenes botulinum [LFPH]
17840
17929
+
Ser
GGA
[ENA]
¡û
>W1610602639
LFPJ01000018
Bacillota
Clostridium sporogenes botulinum [LFPJ]
17842
17931
+
Ser
GGA
[ENA]
¡û
>W1610602791
LFPM01000019
Bacillota
Clostridium sporogenes [LFPM]
17805
17894
+
Ser
GGA
[ENA]
¡û
>W1610635779
LITS01000024
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
65573
65662
+
Ser
GGA
[ENA]
¡û
>W1610673789
LKET01000021
Bacillota
Oxobacter pfennigii [LKET]
403117
403206
+
Ser
GGA
[ENA]
¡û
>W1610690314
LLES01000016
Bacillota
Clostridium sporogenes [LLES]
18040
18129
+
Ser
GGA
[ENA]
¡û
>W1610719530
LLZW01000015
Bacillota
Clostridium sporogenes [LLZW]
18040
18129
+
Ser
GGA
[ENA]
¡û
>W1610888050
LROR01000049
Bacillota
Clostridium coskatii [LROR]
62822
62911
+
Ser
GGA
[ENA]
¡û
>W1610927452
LUAU01000018
Bacillota
Clostridium sporogenes [LUAU]
18139
18228
+
Ser
GGA
[ENA]
¡û
>W1710166814
FAXL01000049
Bacillota
Clostridium tyrobutyricum [FAXL]
13676
13765
+
Ser
GGA
[ENA]
¡û
>W1710586787
FQXL01000051
Bacillota
Clostridium magnum DSM 2767 [FQXL]
17783
17872
+
Ser
GGA
[ENA]
¡û
>W1710600780
FUWT01000024
Bacillota
Clostridium tetani [FUWT]
14127
14038
-
Ser
GGA
[ENA]
¡û
>W1710724041
LFPH01000017
Bacillota
Clostridium sporogenes botulinum [LFPH]
17840
17929
+
Ser
GGA
[ENA]
¡û
>W1710724155
LFPJ01000018
Bacillota
Clostridium sporogenes botulinum [LFPJ]
17842
17931
+
Ser
GGA
[ENA]
¡û
>W1710724307
LFPM01000019
Bacillota
Clostridium sporogenes [LFPM]
17805
17894
+
Ser
GGA
[ENA]
¡û
>W1710770490
LITR01000015
Bacillota
Clostridium autoethanogenum [LITR]
65892
65981
+
Ser
GGA
[ENA]
¡û
>W1710770552
LITS01000024
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
65573
65662
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK