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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24428 (77 seq.)
>W1710806823
LKBN01000998
Gammaproteobacteria
Pseudomonas putida [LKBN]
2398
2487
+
Ser
GGA
[ENA]
¡û
>W1710810369
LKGZ01000012
Gammaproteobacteria
Pseudomonas putida [LKGZ]
714073
714162
+
Ser
GGA
[ENA]
¡û
>W1710875074
LMOC01000006
Gammaproteobacteria
Pseudomonas sp. Leaf129 [LMOC]
436577
436488
-
Ser
GGA
[ENA]
¡û
>W1711117075
LUCV01000058
Gammaproteobacteria
Pseudomonas putida [LUCV]
112010
111921
-
Ser
GGA
[ENA]
¡û
>W1711178797
LWHA01000015
Gammaproteobacteria
Pseudomonas seleniipraecipitans punonensis [LWHA]
76263
76352
+
Ser
GGA
[ENA]
¡û
>W131226145
AUED01000011
Gammaproteobacteria
Pseudomonas vranovensis DSM 16006 [AUED]
195422
195511
+
Ser
GGA
[ENA]
¡û
>W1711509462
MKZO01000025
Gammaproteobacteria
Pseudomonas putida GM4FR [MKZO]
224905
224994
+
Ser
GGA
[ENA]
¡û
>W1711708792
MSXU01000015
Gammaproteobacteria
Pseudomonas sp. PA1(2017) [MSXU]
415839
415750
-
Ser
GGA
[ENA]
¡û
>W1711708815
MSXV01000025
Gammaproteobacteria
Pseudomonas sp. PA15(2017) [MSXV]
40282
40371
+
Ser
GGA
[ENA]
¡û
>W1711708903
MSXW01000054
Gammaproteobacteria
Pseudomonas sp. PA27(2017) [MSXW]
37285
37196
-
Ser
GGA
[ENA]
¡û
>W1711783615
MVOK01000003
Gammaproteobacteria
Pseudomonas sp. MF6396 [MVOK]
104288
104199
-
Ser
GGA
[ENA]
¡û
>W1712049352
NFSA01000048
Gammaproteobacteria
Pseudomonas sp. 1239 [NFSA]
93916
94005
+
Ser
GGA
[ENA]
¡û
>WENV180310632
OBJT01007949
[OBJT] soil metagenome; soil
1328
1417
+
Ser
GGA
[ENA]
¢þ
>W141051137
AMWJ01000176
Gammaproteobacteria
Pseudomonas bharatica CSV86 [AMWJ]
11042
10953
-
Ser
GGA
[ENA]
¡û
>W141091277
AUYO01000037
Gammaproteobacteria
gamma proteobacterium L18 [AUYO]
18149
18238
+
Ser
GGA
[ENA]
¡û
>WENV181190626
OEPS010000502
[OEPS] soil metagenome; soil
3110
3021
-
Ser
GGA
[ENA]
¢þ
>WENV181375108
OFQY01047104
[OFQY] wastewater metagenome; Exp Tend VB 10WW
173
84
-
Ser
GGA
[ENA]
¢þ
>WENV181384571
OFRI01002909
[OFRI] wastewater metagenome; Exp Tend VB 90WW
310
221
-
Ser
GGA
[ENA]
¢þ
>WENV181388740
OFRM01033762
[OFRM] wastewater metagenome; Exp Tend VB 0WW
853
764
-
Ser
GGA
[ENA]
¢þ
>WENV181398990
OFSE01006041
[OFSE] wastewater metagenome; Exp Tend VB 50WW
512
423
-
Ser
GGA
[ENA]
¢þ
>W141217319
AZVM01000002
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I4 [AZVM]
496302
496391
+
Ser
GGA
[ENA]
¡û
>W141236813
BBIR01000012
Gammaproteobacteria
Pseudomonas japonica NBRC 103040 = DSM 22348 [BBIR]
193958
193869
-
Ser
GGA
[ENA]
¡û
>WENV182591354
OJIM01000715
[OJIM] seawater metagenome; Sea water
142
53
-
Ser
GGA
[ENA]
¢þ
>WENV183064749
OLII01000305
[OLII] seawater metagenome; Sea water
1781
1692
-
Ser
GGA
[ENA]
¢þ
>WENV183746671
POYE01065121
[POYE] biofilm metagenome; steel pipe from biofilm reactor
606
517
-
Ser
GGA
[ENA]
¢þ
>C181100532
CP024478
Gammaproteobacteria
Pseudomonas sp. HLS-6 [CP024478]
3789149
3789060
-
Ser
GGA
-
¡û
>C191087614
CP032311
Gammaproteobacteria
Pseudomonas sp. DG56-2 [CP032311]
1581545
1581634
+
Ser
GGA
-
¡û
>C191089486
CP032419
Gammaproteobacteria
Pseudomonas cavernae K2W31S-8 [CP032419]
2876773
2876684
-
Ser
GGA
-
¡û
>C191147664
CP035952
Gammaproteobacteria
Pseudomonas tructae SNU WT1 [CP035952]
4399184
4399095
-
Ser
GGA
-
¡û
>W141556161
JHTS01000048
Gammaproteobacteria
Pseudomonas donghuensis P482 [JHTS]
760
671
-
Ser
GGA
[ENA]
¡û
>W1910504671
FYDQ01000001
Gammaproteobacteria
Pseudomonas sp. Irchel 3F5 [FYDQ]
219813
219902
+
Ser
GGA
[ENA]
¡û
>W1910505108
FYDX01000005
Gammaproteobacteria
Pseudomonas sp. Irchel 3E13 [FYDX]
225142
225231
+
Ser
GGA
[ENA]
¡û
>W1910548371
FZOL01000015
Gammaproteobacteria
Pseudomonas japonica DSM 22348 [FZOL]
4820
4731
-
Ser
GGA
[ENA]
¡û
>W1910766189
MOAM01000028
Gammaproteobacteria
Pseudomonas vranovensis 15D11 [MOAM]
227565
227654
+
Ser
GGA
[ENA]
¡û
>W1911391497
NWCB01000002
Gammaproteobacteria
Pseudomonas donghuensis SVBP6 [NWCB]
738891
738802
-
Ser
GGA
[ENA]
¡û
>W1911493300
OBEM01000004
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I9 [OBEM]
316588
316499
-
Ser
GGA
[ENA]
¡û
>W1911565403
PCOA01000007
Gammaproteobacteria
Pseudomonas sp. MYb187 [PCOA]
220542
220631
+
Ser
GGA
[ENA]
¡û
>W1911587048
PJQQ01000025
Gammaproteobacteria
Pseudomonas sp. FFUP_PS_473 [PJQQ]
53058
53147
+
Ser
GGA
[ENA]
¡û
>W1911680940
QJRG01000049
Gammaproteobacteria
Pseudomonas alkylphenolica xwS2 [QJRG]
163023
163112
+
Ser
GGA
[ENA]
¡û
>W1911681279
QJUH01000015
Gammaproteobacteria
Pseudomonas sp. FRB 228 P2A [QJUH]
33621
33532
-
Ser
GGA
[ENA]
¡û
>W1911681329
QJUI01000010
Gammaproteobacteria
Pseudomonas daroniae P9A [QJUI]
33621
33532
-
Ser
GGA
[ENA]
¡û
>W1911681395
QJUJ01000009
Gammaproteobacteria
Pseudomonas daroniae P18A [QJUJ]
154126
154215
+
Ser
GGA
[ENA]
¡û
>W1911681437
QJUK01000007
Gammaproteobacteria
Pseudomonas daroniae P23A [QJUK]
33667
33578
-
Ser
GGA
[ENA]
¡û
>W1810073296
PEFV01000001
Gammaproteobacteria
Pseudomonas sp. BRM28 [PEFV]
1605067
1605156
+
Ser
GGA
[ENA]
¡û
>W1810120703
PHTD01000010
Gammaproteobacteria
Pseudomonas qingdaonensis JJ3 [PHTD]
200674
200763
+
Ser
GGA
[ENA]
¡û
>W1810176577
PJQC01000205
Gammaproteobacteria
Pseudomonas sp. S06B 330 [PJQC]
4173
4262
+
Ser
GGA
[ENA]
¡û
>W1810368296
PVZN01000028
Gammaproteobacteria
Pseudomonas sp. BBP2017 [PVZN]
27274
27185
-
Ser
GGA
[ENA]
¡û
>W1810579338
QEQL01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I12 [QEQL]
386370
386459
+
Ser
GGA
[ENA]
¡û
>W1810579563
QEQP01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I10 [QEQP]
317086
316997
-
Ser
GGA
[ENA]
¡û
>W1810579676
QEQR01000002
Gammaproteobacteria
Pseudomonas sp. URIL14HWK12:I11 [QEQR]
386186
386275
+
Ser
GGA
[ENA]
¡û
>W1810580721
QETK01000001
Gammaproteobacteria
Pseudomonas sp. SDI [QETK]
97807
97718
-
Ser
GGA
[ENA]
¡û
>W1810682829
QKVL01000004
Gammaproteobacteria
Pseudomonas huaxiensis WCHPs060044 [QKVL]
254343
254432
+
Ser
GGA
[ENA]
¡û
>W1810684869
QKYW01000011
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I2 [QKYW]
135183
135272
+
Ser
GGA
[ENA]
¡û
>W1810884298
QUMN01000001
Gammaproteobacteria
Pseudomonas sp. 1033 [QUMN]
5440381
5440292
-
Ser
GGA
[ENA]
¡û
>C151042320
CP009048
Gammaproteobacteria
Pseudomonas alkylphenolica KL28 [CP009048]
1575792
1575881
+
Ser
GGA
[Ensembl]
¡û
>C151053201
CP009533
Gammaproteobacteria
Pseudomonas rhizosphaerae DSM 16299 [CP009533]
294514
294603
+
Ser
GGA
[Ensembl]
¡û
>W1510061448
CCYK01000006
Gammaproteobacteria
Pseudomonas massiliensis CB1 [CCYK]
584026
583937
-
Ser
GGA
[ENA]
¡û
>W1510800493
JBOP01000001
Gammaproteobacteria
Pseudomonas putida PA14H7 [JBOP]
224373
224462
+
Ser
GGA
[ENA]
¡û
>W1511508044
JXOG01000178
Gammaproteobacteria
Pseudomonas putida UASWS0946 [JXOG]
93911
94000
+
Ser
GGA
[ENA]
¡û
>W1511534608
JYOC01000019
Gammaproteobacteria
Pseudomonas sp. 5 [JYOC]
40860
40949
+
Ser
GGA
[ENA]
¡û
>W1511534764
JYOF01000003
Gammaproteobacteria
Pseudomonas sp. 2(2015) 2[2015] [JYOF]
910541
910452
-
Ser
GGA
[ENA]
¡û
>W1511699682
LGIR01000033
Gammaproteobacteria
Pseudomonas sp. RIT-PI-a [LGIR]
21082
20993
-
Ser
GGA
[ENA]
¡û
>W121062748
AJJP01000175
Gammaproteobacteria
Pseudomonas donghuensis HYS [AJJP]
7318
7229
-
Ser
GGA
[ENA]
¡û
>W121070348
AJWX01000014
Gammaproteobacteria
Pseudomonas sp. M47T1 [AJWX]
42632
42543
-
Ser
GGA
[ENA]
¡û
>W1610059158
BCAT01000010
Gammaproteobacteria
Pseudomonas sp. NBRC 111117 [BCAT]
77281
77192
-
Ser
GGA
[ENA]
¡û
>W1610670790
LKBN01000998
Gammaproteobacteria
Pseudomonas putida [LKBN]
2398
2487
+
Ser
GGA
[ENA]
¡û
>W1610674424
LKGZ01000012
Gammaproteobacteria
Pseudomonas putida [LKGZ]
714073
714162
+
Ser
GGA
[ENA]
¡û
>W1610737420
LMOC01000006
Gammaproteobacteria
Pseudomonas sp. Leaf129 [LMOC]
436577
436488
-
Ser
GGA
[ENA]
¡û
>W1610928434
LUCV01000058
Gammaproteobacteria
Pseudomonas putida [LUCV]
112010
111921
-
Ser
GGA
[ENA]
¡û
>W1710056105
BCAT01000010
Gammaproteobacteria
Pseudomonas sp. NBRC 111117 [BCAT]
77281
77192
-
Ser
GGA
[ENA]
¡û
>W1710075800
BCZZ01000032
Gammaproteobacteria
Pseudomonas flavescens NBRC 103044 [BCZZ]
36406
36317
-
Ser
GGA
[ENA]
¡û
>W1710515104
FNBM01000009
Gammaproteobacteria
Pseudomonas seleniipraecipitans [FNBM]
44152
44063
-
Ser
GGA
[ENA]
¡û
>W1710517388
FNDG01000032
Gammaproteobacteria
Pseudomonas flavescens [FNDG]
13040
13129
+
Ser
GGA
[ENA]
¡û
>W1710527144
FNKV01000001
Gammaproteobacteria
Pseudomonas sp. UC 17F4 [FNKV]
2328786
2328875
+
Ser
GGA
[ENA]
¡û
>W1710537719
FNTZ01000001
Gammaproteobacteria
Pseudomonas coleopterorum [FNTZ]
3266300
3266211
-
Ser
GGA
[ENA]
¡û
>W1710565266
FORC01000001
Gammaproteobacteria
Pseudomonas argentinensis [FORC]
36617
36528
-
Ser
GGA
[ENA]
¡û
>W1710591343
FRBQ01000002
Gammaproteobacteria
Pseudomonas punonensis [FRBQ]
655341
655430
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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