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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24459 (37 seq.)
>W1711082172
LSTR01000021
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
208885
208974
+
Ser
CGA
[ENA]
¡û
>W1711083826
LSVG01000001
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
98046
97957
-
Ser
CGA
[ENA]
¡û
>W1711146747
LVJD01000003
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
18090
18001
-
Ser
CGA
[ENA]
¡û
>W1711227806
LXVX01000039
Alphaproteobacteria
Sphingobium sp. TCM1 [LXVX]
493262
493173
-
Ser
CGA
[ENA]
¡û
>W131002995
AGZU01000008
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
1134301
1134390
+
Ser
CGA
[ENA]
¡û
>W131052355
AMYX01000002
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
11934
11845
-
Ser
CGA
[ENA]
¡û
>WENV180017110
FSWM01000376
[FSWM] metagenome; soil
14820
14731
-
Ser
CGA
[ENA]
¢þ
>WENV180024002
FTIF01007089
[FTIF] metagenome; soil
755
844
+
Ser
CGA
[ENA]
¢þ
>WENV180026031
FTIR01002891
[FTIR] metagenome; soil
614
703
+
Ser
CGA
[ENA]
¢þ
>WENV181168106
OEIU01163168
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
349
260
-
Ser
CGA
[ENA]
¢þ
>WENV181228038
OFDN01122101
[OFDN] hot springs metagenome; Water
106
17
-
Ser
CGA
[ENA]
¢þ
>WENV183729785
PJTR01000074
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
112590
112679
+
Ser
CGA
[ENA]
¢þ
>WENV183730460
PJTS01000036
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
112590
112679
+
Ser
CGA
[ENA]
¢þ
>WENV183732520
PJTX01001441
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
3183
3272
+
Ser
CGA
[ENA]
¢þ
>WENV183733026
PJTY01000021
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
74774
74863
+
Ser
CGA
[ENA]
¢þ
>WENV183734280
PJTZ01000966
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
170
259
+
Ser
CGA
[ENA]
¢þ
>WENV183736906
PJUD01000093
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
112458
112547
+
Ser
CGA
[ENA]
¢þ
>C181047620
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
40983
40894
-
Ser
CGA
-
¡û
>C181089686
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
5314802
5314891
+
Ser
CGA
-
¡û
>C181186361
CP029985
Alphaproteobacteria
Sphingomonas sp. FARSPH [CP029985]
2308361
2308450
+
Ser
CGA
-
¡û
>W141520476
JGVR01000061
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
6610
6521
-
Ser
CGA
[ENA]
¡û
>C191063636
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
4430790
4430879
+
Ser
CGA
-
¡û
>C191103891
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
4465831
4465920
+
Ser
CGA
-
¡û
>C191163674
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
1419922
1420011
+
Ser
CGA
-
¡û
>W141807727
JPOU01000002
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
413476
413387
-
Ser
CGA
[ENA]
¡û
>W1910889703
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
1793688
1793777
+
Ser
CGA
[ENA]
¡û
>W1911114842
NOIW01000117
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
13524
13613
+
Ser
CGA
[ENA]
¡û
>W1911688321
QLJK01000036
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
32817
32906
+
Ser
CGA
[ENA]
¡û
>W1911722458
QRAL01000050
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
13942
14031
+
Ser
CGA
[ENA]
¡û
>W1510941308
JFFT01000001
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
252956
253045
+
Ser
CGA
[ENA]
¡û
>W1511592077
LBIC01000001
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
839345
839434
+
Ser
CGA
[ENA]
¡û
>W11176430
AFXE01000075
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
121084
121173
+
Ser
CGA
[ENA]
¡û
>W121068961
AJVL01000058
Alphaproteobacteria
Sphingobium sp. AP49 [AJVL]
117397
117486
+
Ser
CGA
[ENA]
¡û
>W1610920957
LSTR01000021
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
208885
208974
+
Ser
CGA
[ENA]
¡û
>W1610922579
LSVG01000001
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
98046
97957
-
Ser
CGA
[ENA]
¡û
>W1611011770
LXVX01000039
Alphaproteobacteria
Sphingobium sp. TCM1 [LXVX]
493262
493173
-
Ser
CGA
[ENA]
¡û
>W1710592144
FRCG01000002
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
302165
302254
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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