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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244790 (42 seq.)
>WENV180084433
MPMD02190640
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
603
676
+
Ala
GGC
[ENA]
¢þ
>WENV180085437
MPMD02325612
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
2172
2099
-
Ala
GGC
[ENA]
¢þ
>WENV180245567
OBDM01102089
[OBDM] human gut metagenome; human gut
1
76
+
Ala
GGC
[ENA]
¢þ
>WENV181661573
OGOG01004045
[OGOG] human gut metagenome; faeces
1545
1470
-
Ala
GGC
[ENA]
¢þ
>WENV181700746
OGPG01065404
[OGPG] human gut metagenome; faeces
124
49
-
Ala
GGC
[ENA]
¢þ
>WENV181703809
OGPJ01029869
[OGPJ] human gut metagenome; faeces
499
574
+
Ala
GGC
[ENA]
¢þ
>WENV181715033
OGPR01018189
[OGPR] human gut metagenome; faeces
55
130
+
Ala
GGC
[ENA]
¢þ
>WENV181718491
OGPT01020982
[OGPT] human gut metagenome; faeces
2186
2111
-
Ala
GGC
[ENA]
¢þ
>WENV181719915
OGPU01002186
[OGPU] human gut metagenome; faeces
3296
3371
+
Ala
GGC
[ENA]
¢þ
>WENV181727281
OGQA01000006
[OGQA] human gut metagenome; faeces
92251
92176
-
Ala
GGC
[ENA]
¢þ
>WENV181739848
OGQJ01001190
[OGQJ] human gut metagenome; faeces
13174
13249
+
Ala
GGC
[ENA]
¢þ
>WENV181743619
OGQL01017431
[OGQL] human gut metagenome; faeces
527
602
+
Ala
GGC
[ENA]
¢þ
>WENV181746069
OGQN01000249
[OGQN] human gut metagenome; faeces
32879
32804
-
Ala
GGC
[ENA]
¢þ
>WENV181785549
OGRM01048394
[OGRM] human gut metagenome; faeces
243
318
+
Ala
GGC
[ENA]
¢þ
>WENV181786188
OGRN01001027
[OGRN] human gut metagenome; faeces
2817
2742
-
Ala
GGC
[ENA]
¢þ
>WENV181788652
OGRO01002464
[OGRO] human gut metagenome; faeces
11151
11076
-
Ala
GGC
[ENA]
¢þ
>WENV181800016
OGRY01010880
[OGRY] human gut metagenome; faeces
1588
1513
-
Ala
GGC
[ENA]
¢þ
>WENV181829204
OGUN01008186
[OGUN] human gut metagenome; faeces
1357
1282
-
Ala
GGC
[ENA]
¢þ
>WENV182299437
OHWK01005199
[OHWK] human gut metagenome; feces
2124
2199
+
Ala
GGC
[ENA]
¢þ
>WENV182351981
OIBI01002186
[OIBI] human gut metagenome; feces
1411
1486
+
Ala
GGC
[ENA]
¢þ
>WENV183143844
OLOL01000162
[OLOL] human gut metagenome; faeces
9693
9768
+
Ala
GGC
[ENA]
¢þ
>WENV183153496
OLOR01000108
[OLOR] human gut metagenome; faeces
3475
3550
+
Ala
GGC
[ENA]
¢þ
>WENV183157751
OLOT01003865
[OLOT] human gut metagenome; faeces
5930
5855
-
Ala
GGC
[ENA]
¢þ
>WENV183164491
OLOX01000311
[OLOX] human gut metagenome; faeces
51134
51209
+
Ala
GGC
[ENA]
¢þ
>WENV183180485
OLPI01000322
[OLPI] human gut metagenome; faeces
26071
26146
+
Ala
GGC
[ENA]
¢þ
>WENV183192031
OLPR01076438
[OLPR] human gut metagenome; faeces
142
67
-
Ala
GGC
[ENA]
¢þ
>WENV183194202
OLPS01036658
[OLPS] human gut metagenome; faeces
75
1
-
Ala
GGC
[ENA]
¢þ
>WENV183205135
OLPZ01002896
[OLPZ] human gut metagenome; faeces
6048
5973
-
Ala
GGC
[ENA]
¢þ
>WENV183209795
OLQC01000045
[OLQC] human gut metagenome; faeces
101291
101216
-
Ala
GGC
[ENA]
¢þ
>WENV183248577
OLRG01000049
[OLRG] human gut metagenome; faeces
88164
88089
-
Ala
GGC
[ENA]
¢þ
>WENV183264172
OLRR01006949
[OLRR] human gut metagenome; faeces
679
604
-
Ala
GGC
[ENA]
¢þ
>WENV183298380
OLSN01000087
[OLSN] human gut metagenome; faeces
62605
62530
-
Ala
GGC
[ENA]
¢þ
>WENV183326659
OLVZ01032831
[OLVZ] human gut metagenome; faeces
558
633
+
Ala
GGC
[ENA]
¢þ
>WENV183330752
OLWB01020417
[OLWB] human gut metagenome; faeces
1934
1859
-
Ala
GGC
[ENA]
¢þ
>WENV183804254
PVBE010912877
[PVBE] marine metagenome; water
603
676
+
Ala
GGC
[ENA]
¢þ
>WENV170056490
CDZG01003967
[CDZG] gut metagenome; human stools
86
161
+
Ala
GGC
[ENA]
¢þ
>WENV170540099
CWGU01000043
[CWGU] human gut metagenome; ENVO:feces
2647
2722
+
Ala
GGC
[ENA]
¢þ
>WENV170540282
CWGY01000027
[CWGY] human gut metagenome; ENVO:feces
36804
36879
+
Ala
GGC
[ENA]
¢þ
>WENV170540291
CWGY01000027
[CWGY] human gut metagenome; ENVO:feces
45516
45441
-
Ala
GGC
[ENA]
¢þ
>W1710540423
FNWT01000007
Actinomycetota
Parafannyhessea umbonata [FNWT]
4640
4715
+
Ala
GGC
[ENA]
¡û
>W1710552112
FOGP01000005
Actinomycetota
Parafannyhessea umbonata [FOGP]
122550
122475
-
Ala
GGC
[ENA]
¡û
>W1710600634
FUWQ01000005
Actinomycetota
Olsenella sp. KH1P3 KH1P3 [FUWQ]
126014
125939
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK