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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245051 (23 seq.)
>W1711505886
MKVX01000018
Alphaproteobacteria
Rhizobiales bacterium 62-47 [MKVX]
1202102
1202025
-
Pro
GGG
[ENA]
¡û
>W131186378
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
1142527
1142450
-
Pro
GGG
[ENA]
¡û
>C171115929
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
4625700
4625777
+
Pro
GGG
-
¡û
>C171131961
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
4111936
4111859
-
Pro
GGG
-
¡û
>C004066
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
4855481
4855404
-
Pro
GGG
[Ensembl]
¡û
>C004111
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
4618617
4618540
-
Pro
GGG
[Ensembl]
¡û
>W141214004
AZSJ01000007
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
827309
827232
-
Pro
GGG
[ENA]
¡û
>WENV182409031
OIFG01000545
[OIFG] human gut metagenome; stool
336
413
+
Pro
GGG
[ENA]
¢þ
>W141240083
CAFK01000122
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
17118
17195
+
Pro
GGG
[ENA]
¡û
>WENV182955025
OKWB01005810
[OKWB] human gut metagenome; stool
114
191
+
Pro
GGG
[ENA]
¢þ
>WENV182962849
OKWO01000809
[OKWO] human gut metagenome; stool
1549
1626
+
Pro
GGG
[ENA]
¢þ
>WENV182962990
OKWP01000063
[OKWP] human gut metagenome; stool
12778
12701
-
Pro
GGG
[ENA]
¢þ
>WENV182966383
OKWV01003932
[OKWV] human gut metagenome; stool
114
37
-
Pro
GGG
[ENA]
¢þ
>WENV183736619
PJUC01024891
[PJUC] soil metagenome; Soil enriched on filter paper
407
330
-
Pro
GGG
[ENA]
¢þ
>WENV183740469
PJUF01002435
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1107
1184
+
Pro
GGG
[ENA]
¢þ
>WENV183745337
PJUL01027523
[PJUL] feces metagenome; Chicken feces enriched on filter paper
245
322
+
Pro
GGG
[ENA]
¢þ
>WENV170004633
AGTN01742124
[AGTN] bioreactor metagenome; poplar biomass
301
224
-
Pro
GGG
[ENA]
¢þ
>WENV170709053
LNFM01000084
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
103569
103646
+
Pro
GGG
[ENA]
¢þ
>W09104112
AALJ01000003
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [AALJ]
468198
468121
-
Pro
GGG
[ENA]
¡û
>W121127083
CAFH01000149
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
68938
69015
+
Pro
GGG
[ENA]
¡û
>W121127121
CAFI01000122
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
14916
14839
-
Pro
GGG
[ENA]
¡û
>W121127170
CAFJ01000223
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
19250
19173
-
Pro
GGG
[ENA]
¡û
>C131000809
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
3794215
3794292
+
Pro
GGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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