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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245515 (4 seq.)
>W1711183725
LWLG01000006
Thermodesulfobacteriota
Thermosulfurimonas dismutans [LWLG]
3702
3627
-
Glu
CTC
[ENA]
¡û
>W131217997
ATXH01000008
Thermodesulfobacteriota
Thermodesulfatator atlanticus DSM 21156 [ATXH]
80177
80252
+
Glu
CTC
[ENA]
¡û
>WENV180332499
OBLD01024046
[OBLD] metagenome; water
46
121
+
Glu
CTC
[ENA]
¢þ
>W1610989619
LWLG01000006
Thermodesulfobacteriota
Thermosulfurimonas dismutans [LWLG]
3702
3627
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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