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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245572 (40 seq.)
>W1710860967
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
2726324
2726251
-
Lys
CTT
[ENA]
¡û
>W1710863010
LMET01000002
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
314009
313936
-
Lys
CTT
[ENA]
¡û
>W1710867981
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
3692057
3691984
-
Lys
CTT
[ENA]
¡û
>W1710879927
LMRZ01000004
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
470429
470504
+
Lys
CTT
[ENA]
¡û
>W1710881449
LMTB01000095
Actinomycetota
Dietzia timorensis [LMTB]
801
726
-
Lys
CTT
[ENA]
¡û
>W1711187495
LWPN01000219
Actinomycetota
Kytococcus sp. HMSC28H12 [LWPN]
388
463
+
Lys
CTT
[ENA]
¡û
>C171033890
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
1466360
1466287
-
Lys
CTT
-
¡û
>C171045498
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
1472390
1472315
-
Lys
CTT
-
¡û
>C171045545
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
1460477
1460402
-
Lys
CTT
-
¡û
>C021641
AM420293
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [AM420293]
1424033
1423961
-
Lys
CTT
[Ensembl]
¡û
>WENV180356801
OBNL01031088
[OBNL] marine metagenome; ENVO:00002010
176
249
+
Lys
CTT
[ENA]
¢þ
>W141094388
AVCN01000022
Actinomycetota
Saccharopolyspora erythraea D [AVCN]
16151
16078
-
Lys
CTT
[ENA]
¡û
>WENV181634968
OGMW01065658
[OGMW] metagenome; Human gut stool
161
88
-
Lys
CTT
[ENA]
¢þ
>W141185612
AYJW01000118
Actinomycetota
Saccharopolyspora rectivirgula DSM 43747 [AYJW]
3047
2974
-
Lys
CTT
[ENA]
¡û
>WENV170973210
MTKY01019605
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1080
1153
+
Lys
CTT
[ENA]
¢þ
>C181067278
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
1427708
1427633
-
Lys
CTT
-
¡û
>C181144039
CP026952
Actinomycetota
Aeromicrobium chenweiae 592 [CP026952]
1039053
1038978
-
Lys
CTT
-
¡û
>C191051504
CP027482
Actinomycetota
Aeromicrobium sp. A1-2 [CP027482]
763074
763001
-
Lys
CTT
-
¡û
>W09127780
ACLF01001154
Actinomycetota
Aeromicrobium marinum DSM 15272 [ACLF]
895
820
-
Lys
CTT
[ENA]
¡û
>W141775214
JOJN01000007
Actinomycetota
Nocardioides aequoreus [JOJN]
21979
21904
-
Lys
CTT
[ENA]
¡û
>W1911584615
PIPF01000001
Actinomycetota
Janibacter hoylei PVAS-1 [PIPF]
305411
305338
-
Lys
CTT
[ENA]
¡û
>W1810504376
QBKV01000002
Actinomycetota
Saccharopolyspora hirsuta DSM 44795 [QBKV]
1531950
1531877
-
Lys
CTT
[ENA]
¡û
>W1810504377
QBKV01000002
Actinomycetota
Saccharopolyspora hirsuta DSM 44795 [QBKV]
1531777
1531704
-
Lys
CTT
[ENA]
¡û
>W1810701922
QMFW01000084
Actinomycetota
Janibacter anophelis TNDT5 [QMFW]
1345
1270
-
Lys
CTT
[ENA]
¡û
>W1810870304
QUBR01000002
Actinomycetota
Aeromicrobium endophyticum M2KJ-4 [QUBR]
1328045
1328118
+
Lys
CTT
[ENA]
¡û
>C151039183
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
1090151
1090226
+
Lys
CTT
[Ensembl]
¡û
>C151039217
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
1090776
1090701
-
Lys
CTT
[Ensembl]
¡û
>C151077124
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
3935054
3935129
+
Lys
CTT
-
¡û
>W1511568135
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
995048
994973
-
Lys
CTT
[ENA]
¡û
>W1610072280
BCUV01000002
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
487250
487325
+
Lys
CTT
[ENA]
¡û
>W1610723313
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
2726324
2726251
-
Lys
CTT
[ENA]
¡û
>W1610725356
LMET01000002
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
314009
313936
-
Lys
CTT
[ENA]
¡û
>W1610730327
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
3692057
3691984
-
Lys
CTT
[ENA]
¡û
>W1610742273
LMRZ01000004
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
470429
470504
+
Lys
CTT
[ENA]
¡û
>W1610743795
LMTB01000095
Actinomycetota
Dietzia timorensis [LMTB]
801
726
-
Lys
CTT
[ENA]
¡û
>W1710069482
BCUV01000002
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
487250
487325
+
Lys
CTT
[ENA]
¡û
>W1710533078
FNQV01000011
Actinomycetota
Bowdeniella nasicola [FNQV]
85016
85089
+
Lys
CTT
[ENA]
¡û
>W1710539120
FNVB01000009
Actinomycetota
Saccharopolyspora kobensis hirsuta [FNVB]
8551
8478
-
Lys
CTT
[ENA]
¡û
>W1710539121
FNVB01000009
Actinomycetota
Saccharopolyspora kobensis hirsuta [FNVB]
8378
8305
-
Lys
CTT
[ENA]
¡û
>W1710606108
FWXN01000011
Actinomycetota
Janibacter indicus [FWXN]
67331
67404
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK