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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245821 (10 seq.)
>WENV180385624
OBPA01047055
[OBPA] marine metagenome; Sterile flask
143
68
-
Phe
GAA
[ENA]
¢þ
>WENV180386519
OBPC01008722
[OBPC] marine metagenome; Sterile flask
305
230
-
Phe
GAA
[ENA]
¢þ
>WENV180387442
OBPF01000380
[OBPF] marine metagenome; Sterile flask
3058
2983
-
Phe
GAA
[ENA]
¢þ
>WENV180387744
OBPG01000118
[OBPG] marine metagenome; Sterile flask
3970
3895
-
Phe
GAA
[ENA]
¢þ
>WENV180388296
OBPH01000037
[OBPH] marine metagenome; Sterile flask
24814
24739
-
Phe
GAA
[ENA]
¢þ
>WENV180388811
OBPI01000061
[OBPI] marine metagenome; Sterile flask
592
667
+
Phe
GAA
[ENA]
¢þ
>WENV180389789
OBPK01000084
[OBPK] marine metagenome; Sterile flask
9361
9286
-
Phe
GAA
[ENA]
¢þ
>WENV180589684
OCOS01006737
[OCOS] marine metagenome; Sterile flask
786
711
-
Phe
GAA
[ENA]
¢þ
>WENV170023148
BCQK01137430
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
11
86
+
Phe
GAA
[ENA]
¢þ
>WENV170536703
CEWP01278964
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
556
481
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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