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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.246381 (58 seq.)
>WENV180006315
FLRY01006500
[FLRY] metagenome; saliva
71
145
+
Lys
TTT
[ENA]
¢þ
>WENV180007655
FLSA01156862
[FLSA] metagenome; saliva
52
126
+
Lys
TTT
[ENA]
¢þ
>WENV180008910
FLSB01213229
[FLSB] metagenome; saliva
7359
7433
+
Lys
TTT
[ENA]
¢þ
>WENV180009431
FLSC01002873
[FLSC] metagenome; saliva
10824
10752
-
Lys
TTT
[ENA]
¢þ
>WENV180717038
ODGA01004785
[ODGA] human metagenome; G_DNA_Buccal mucosa
491
417
-
Lys
TTT
[ENA]
¢þ
>WENV180766002
ODID01015538
[ODID] human metagenome; G_DNA_Attached/Keratinized gingiva
265
339
+
Lys
TTT
[ENA]
¢þ
>WENV180779717
ODIN01013168
[ODIN] human metagenome; G_DNA_Throat
945
1019
+
Lys
TTT
[ENA]
¢þ
>WENV180781712
ODIP01002357
[ODIP] human metagenome; G_DNA_Supragingival plaque
5110
5184
+
Lys
TTT
[ENA]
¢þ
>WENV180783599
ODIQ01012486
[ODIQ] human metagenome; G_DNA_Tongue dorsum
1438
1364
-
Lys
TTT
[ENA]
¢þ
>WENV180789891
ODIT01001449
[ODIT] human metagenome; G_DNA_Tongue dorsum
2779
2853
+
Lys
TTT
[ENA]
¢þ
>WENV180791759
ODIV01006371
[ODIV] human metagenome; G_DNA_Buccal mucosa
306
232
-
Lys
TTT
[ENA]
¢þ
>WENV180792333
ODIW01000277
[ODIW] human metagenome; G_DNA_Tongue dorsum
5673
5747
+
Lys
TTT
[ENA]
¢þ
>WENV180806437
ODJH01019192
[ODJH] human metagenome; G_DNA_Tongue dorsum
154
228
+
Lys
TTT
[ENA]
¢þ
>WENV180807108
ODJI01000542
[ODJI] human metagenome; G_DNA_Tongue dorsum
7328
7402
+
Lys
TTT
[ENA]
¢þ
>WENV180809949
ODJK01075856
[ODJK] human metagenome; G_DNA_Subgingival plaque
104
30
-
Lys
TTT
[ENA]
¢þ
>WENV180815977
ODJP01003075
[ODJP] human metagenome; G_DNA_Tongue dorsum
6637
6711
+
Lys
TTT
[ENA]
¢þ
>WENV180831963
ODKC01000298
[ODKC] human metagenome; G_DNA_Supragingival plaque
5441
5515
+
Lys
TTT
[ENA]
¢þ
>WENV180862638
ODLF01000619
[ODLF] human metagenome; G_DNA_Buccal mucosa
1721
1795
+
Lys
TTT
[ENA]
¢þ
>WENV180863999
ODLH01006558
[ODLH] human metagenome; G_DNA_Tongue dorsum
3126
3200
+
Lys
TTT
[ENA]
¢þ
>WENV180866447
ODLJ01021361
[ODLJ] human metagenome; G_DNA_Tongue dorsum
450
376
-
Lys
TTT
[ENA]
¢þ
>WENV180873324
ODLP01003539
[ODLP] human metagenome; G_DNA_Tongue dorsum
3090
3164
+
Lys
TTT
[ENA]
¢þ
>WENV180897480
ODNI01028118
[ODNI] human metagenome; G_DNA_Tongue dorsum
576
648
+
Lys
TTT
[ENA]
¢þ
>WENV180913145
ODST01000002
[ODST] human metagenome; G_DNA_Attached/Keratinized gingiva
219934
219860
-
Lys
TTT
[ENA]
¢þ
>WENV180914823
ODSZ01017371
[ODSZ] human metagenome; G_DNA_Buccal mucosa
78
153
+
Lys
TTT
[ENA]
¢þ
>WENV180920279
ODTH01003068
[ODTH] human metagenome; G_DNA_Tongue dorsum
2883
2809
-
Lys
TTT
[ENA]
¢þ
>WENV180928434
ODTM01049077
[ODTM] human metagenome; G_DNA_Supragingival plaque
287
361
+
Lys
TTT
[ENA]
¢þ
>WENV180932169
ODTP01028592
[ODTP] human metagenome; G_DNA_Tongue dorsum
1186
1112
-
Lys
TTT
[ENA]
¢þ
>WENV180945759
ODUD01000034
[ODUD] human metagenome; G_DNA_Tongue dorsum
35632
35706
+
Lys
TTT
[ENA]
¢þ
>WENV180947633
ODUG01000003
[ODUG] human metagenome; G_DNA_Tongue dorsum
242068
241994
-
Lys
TTT
[ENA]
¢þ
>WENV180950537
ODUH01000088
[ODUH] human metagenome; G_DNA_Subgingival plaque
987
913
-
Lys
TTT
[ENA]
¢þ
>WENV180959013
ODUM01000029
[ODUM] human metagenome; G_DNA_Tongue dorsum
49737
49663
-
Lys
TTT
[ENA]
¢þ
>WENV180963819
ODUO01000004
[ODUO] human metagenome; G_DNA_Supragingival plaque
218878
218804
-
Lys
TTT
[ENA]
¢þ
>WENV180974378
ODUX01000127
[ODUX] human metagenome; G_DNA_Buccal mucosa
5369
5443
+
Lys
TTT
[ENA]
¢þ
>WENV180978151
ODUZ01021558
[ODUZ] human metagenome; G_DNA_Tongue dorsum
366
292
-
Lys
TTT
[ENA]
¢þ
>WENV180985563
ODVJ01008194
[ODVJ] human metagenome; G_DNA_Tongue dorsum
3224
3298
+
Lys
TTT
[ENA]
¢þ
>WENV180991492
ODVO01000002
[ODVO] human metagenome; G_DNA_Buccal mucosa
122346
122272
-
Lys
TTT
[ENA]
¢þ
>WENV181007382
ODWE01000057
[ODWE] human metagenome; G_DNA_Supragingival plaque
60923
60997
+
Lys
TTT
[ENA]
¢þ
>WENV181010973
ODWI01002024
[ODWI] human metagenome; G_DNA_Tongue dorsum
4222
4148
-
Lys
TTT
[ENA]
¢þ
>WENV181025863
ODXB01060651
[ODXB] human metagenome; G_DNA_Buccal mucosa
111
185
+
Lys
TTT
[ENA]
¢þ
>WENV181033332
ODXN01005255
[ODXN] human metagenome; G_DNA_Tongue dorsum
829
903
+
Lys
TTT
[ENA]
¢þ
>WENV181042352
ODXU01000003
[ODXU] human metagenome; G_DNA_Buccal mucosa
94715
94789
+
Lys
TTT
[ENA]
¢þ
>WENV181066051
ODYV01039125
[ODYV] human metagenome; G_DNA_Buccal mucosa
274
202
-
Lys
TTT
[ENA]
¢þ
>WENV181084692
OEAX01000023
[OEAX] human metagenome; G_DNA_Tongue dorsum
12985
13059
+
Lys
TTT
[ENA]
¢þ
>WENV181085890
OEAY01000006
[OEAY] human metagenome; G_DNA_Tongue dorsum
284481
284555
+
Lys
TTT
[ENA]
¢þ
>WENV181090190
OEBC01000022
[OEBC] human metagenome; G_DNA_Supragingival plaque
77918
77844
-
Lys
TTT
[ENA]
¢þ
>WENV181095476
OEBY01009382
[OEBY] human metagenome; G_DNA_Tongue dorsum
3175
3103
-
Lys
TTT
[ENA]
¢þ
>WENV181103338
OECT01079229
[OECT] human metagenome; G_DNA_Tongue dorsum
138
63
-
Lys
TTT
[ENA]
¢þ
>WENV181104561
OEED01000002
[OEED] human metagenome; G_DNA_Tongue dorsum
6617
6691
+
Lys
TTT
[ENA]
¢þ
>WENV181106616
OEEI01000011
[OEEI] human metagenome; G_DNA_Supragingival plaque
70199
70273
+
Lys
TTT
[ENA]
¢þ
>WENV181108341
OEEJ01000008
[OEEJ] human metagenome; G_DNA_Tongue dorsum
129305
129231
-
Lys
TTT
[ENA]
¢þ
>WENV181113755
OEEL01097380
[OEEL] human metagenome; G_DNA_Tongue dorsum
125
50
-
Lys
TTT
[ENA]
¢þ
>WENV181140144
OEGN01065437
[OEGN] human metagenome; G_DNA_Tongue dorsum
436
510
+
Lys
TTT
[ENA]
¢þ
>WENV181143961
OEHM01032740
[OEHM] human metagenome; G_DNA_Supragingival plaque
316
390
+
Lys
TTT
[ENA]
¢þ
>WENV181151284
OEHW01033489
[OEHW] human metagenome; G_DNA_Tongue dorsum
817
891
+
Lys
TTT
[ENA]
¢þ
>WENV181157941
OEIG01057605
[OEIG] human metagenome; G_DNA_Hard palate
365
291
-
Lys
TTT
[ENA]
¢þ
>WENV181175348
OEJQ01000592
[OEJQ] human metagenome; G_DNA_Tongue dorsum
4220
4146
-
Lys
TTT
[ENA]
¢þ
>WENV181176073
OEJR01000005
[OEJR] human metagenome; G_DNA_Saliva
6583
6657
+
Lys
TTT
[ENA]
¢þ
>WENV181177943
OEJS01031747
[OEJS] human metagenome; G_DNA_Supragingival plaque
758
832
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK