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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.246564 (13 seq.)
>WENV180672701
OCVV011331669
[OCVV] gut metagenome; gut
5892
5818
-
Val
CAC
[ENA]
¢þ
>WENV180672702
OCVV011331669
[OCVV] gut metagenome; gut
5892
5818
-
Val
CAC
[ENA]
¢þ
>WENV180680755
OCVV012636123
[OCVV] gut metagenome; gut
77
152
+
Val
CAC
[ENA]
¢þ
>WENV180680756
OCVV012636123
[OCVV] gut metagenome; gut
77
152
+
Val
CAC
[ENA]
¢þ
>WENV180724620
ODGR01001633
[ODGR] human metagenome; G_DNA_Tongue dorsum
1445
1373
-
Val
CAC
[ENA]
¢þ
>WENV180815459
ODJP01000466
[ODJP] human metagenome; G_DNA_Tongue dorsum
31485
31557
+
Val
CAC
[ENA]
¢þ
>WENV180896461
ODNI01000728
[ODNI] human metagenome; G_DNA_Tongue dorsum
6228
6300
+
Val
CAC
[ENA]
¢þ
>WENV181039991
ODXQ01098199
[ODXQ] human metagenome; G_DNA_Tongue dorsum
387
315
-
Val
CAC
[ENA]
¢þ
>WENV181074469
OEAO01008995
[OEAO] human metagenome; G_DNA_Tongue dorsum
881
809
-
Val
CAC
[ENA]
¢þ
>WENV181087001
OEAY01007648
[OEAY] human metagenome; G_DNA_Tongue dorsum
2691
2619
-
Val
CAC
[ENA]
¢þ
>WENV181096144
OEBY01059472
[OEBY] human metagenome; G_DNA_Tongue dorsum
241
313
+
Val
CAC
[ENA]
¢þ
>WENV181105171
OEED01001446
[OEED] human metagenome; G_DNA_Tongue dorsum
1461
1389
-
Val
CAC
[ENA]
¢þ
>WENV181115393
OEEO01065645
[OEEO] human metagenome; G_DNA_Supragingival plaque
144
72
-
Val
CAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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