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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.246789 (104 seq.)
>W1711724146
MTPX01000038
Actinomycetota
Actinomyces ruminis CtC 72 [MTPX]
16048
16123
+
Arg
CCT
[ENA]
¡û
>W1711774067
MVIV01000005
Actinomycetota
Actinomyces gaoshouyii pika_113 [MVIV]
10652
10579
-
Arg
CCT
[ENA]
¡û
>W1711774109
MVIW01000005
Actinomycetota
Actinomyces denticolens [MVIW]
90756
90829
+
Arg
CCT
[ENA]
¡û
>C171108511
CP020468
Actinomycetota
Actinomyces gaoshouyii pika_114 [CP020468]
234409
234482
+
Arg
CCT
-
¡û
>W131222649
AUBL01000010
Actinomycetota
Actinomyces dentalis DSM 19115 [AUBL]
13018
12945
-
Arg
CCT
[ENA]
¡û
>W131222746
AUBN01000008
Actinomycetota
Actinomyces gerencseriae DSM 6844 [AUBN]
9936
9863
-
Arg
CCT
[ENA]
¡û
>W141024097
AKGF01000022
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
11787
11862
+
Arg
CCT
[ENA]
¡û
>WENV180284302
OBID01026962
[OBID] metagenome; sludge
382
309
-
Arg
CCT
[ENA]
¢þ
>WENV180698084
ODDE01030963
[ODDE] human metagenome; G_DNA_Supragingival plaque
106
32
-
Arg
CCT
[ENA]
¢þ
>WENV180732843
ODGY01005425
[ODGY] human metagenome; G_DNA_Supragingival plaque
7
80
+
Arg
CCT
[ENA]
¢þ
>WENV180733914
ODGZ01001329
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2101
2028
-
Arg
CCT
[ENA]
¢þ
>WENV180739077
ODHD01004347
[ODHD] human metagenome; G_DNA_Supragingival plaque
2472
2398
-
Arg
CCT
[ENA]
¢þ
>WENV180750944
ODHS01013960
[ODHS] human metagenome; G_DNA_Supragingival plaque
436
510
+
Arg
CCT
[ENA]
¢þ
>WENV180764611
ODIB01000104
[ODIB] human metagenome; G_DNA_Supragingival plaque
11926
11853
-
Arg
CCT
[ENA]
¢þ
>WENV180777397
ODIL01004146
[ODIL] human metagenome; G_DNA_Supragingival plaque
2438
2512
+
Arg
CCT
[ENA]
¢þ
>WENV180778243
ODIM01002041
[ODIM] human metagenome; G_DNA_Supragingival plaque
2417
2490
+
Arg
CCT
[ENA]
¢þ
>WENV180787454
ODIS01006414
[ODIS] human metagenome; G_DNA_Supragingival plaque
1595
1521
-
Arg
CCT
[ENA]
¢þ
>WENV180796630
ODJB01008483
[ODJB] human metagenome; G_DNA_Supragingival plaque
3516
3443
-
Arg
CCT
[ENA]
¢þ
>WENV180801134
ODJD01009160
[ODJD] human metagenome; G_DNA_Supragingival plaque
2
76
+
Arg
CCT
[ENA]
¢þ
>WENV180814332
ODJO01013592
[ODJO] human metagenome; G_DNA_Supragingival plaque
2697
2771
+
Arg
CCT
[ENA]
¢þ
>WENV180822340
ODJT01000401
[ODJT] human metagenome; G_DNA_Supragingival plaque
12156
12229
+
Arg
CCT
[ENA]
¢þ
>WENV180843744
ODKN01010160
[ODKN] human metagenome; G_DNA_Supragingival plaque
2419
2492
+
Arg
CCT
[ENA]
¢þ
>WENV180847337
ODKT01064360
[ODKT] human metagenome; G_DNA_Supragingival plaque
103
177
+
Arg
CCT
[ENA]
¢þ
>WENV180881470
ODMA01000588
[ODMA] human metagenome; G_DNA_Supragingival plaque
3507
3434
-
Arg
CCT
[ENA]
¢þ
>WENV180888655
ODMN01002307
[ODMN] human metagenome; G_DNA_Supragingival plaque
393
466
+
Arg
CCT
[ENA]
¢þ
>WENV180922792
ODTJ01011533
[ODTJ] human metagenome; G_DNA_Supragingival plaque
2466
2392
-
Arg
CCT
[ENA]
¢þ
>WENV180924479
ODTK01005821
[ODTK] human metagenome; G_DNA_Supragingival plaque
1953
1879
-
Arg
CCT
[ENA]
¢þ
>WENV180927652
ODTM01002068
[ODTM] human metagenome; G_DNA_Supragingival plaque
546
620
+
Arg
CCT
[ENA]
¢þ
>WENV180933591
ODTR01000690
[ODTR] human metagenome; G_DNA_Supragingival plaque
11877
11951
+
Arg
CCT
[ENA]
¢þ
>WENV180934000
ODTR01010716
[ODTR] human metagenome; G_DNA_Supragingival plaque
1406
1333
-
Arg
CCT
[ENA]
¢þ
>WENV180938547
ODTX01003090
[ODTX] human metagenome; G_DNA_Supragingival plaque
121
48
-
Arg
CCT
[ENA]
¢þ
>WENV180938989
ODTX01011585
[ODTX] human metagenome; G_DNA_Supragingival plaque
3000
3073
+
Arg
CCT
[ENA]
¢þ
>WENV180944156
ODUC01009245
[ODUC] human metagenome; G_DNA_Supragingival plaque
1944
2018
+
Arg
CCT
[ENA]
¢þ
>WENV180958338
ODUL01003117
[ODUL] human metagenome; G_DNA_Supragingival plaque
2845
2919
+
Arg
CCT
[ENA]
¢þ
>WENV180964648
ODUO01008100
[ODUO] human metagenome; G_DNA_Supragingival plaque
2025
2099
+
Arg
CCT
[ENA]
¢þ
>WENV180964884
ODUO01039592
[ODUO] human metagenome; G_DNA_Supragingival plaque
433
507
+
Arg
CCT
[ENA]
¢þ
>WENV180973389
ODUW01004635
[ODUW] human metagenome; G_DNA_Supragingival plaque
5466
5539
+
Arg
CCT
[ENA]
¢þ
>WENV180981104
ODVE01006968
[ODVE] human metagenome; G_DNA_Supragingival plaque
3517
3444
-
Arg
CCT
[ENA]
¢þ
>WENV180981443
ODVE01022636
[ODVE] human metagenome; G_DNA_Supragingival plaque
7
80
+
Arg
CCT
[ENA]
¢þ
>WENV180981449
ODVE01022877
[ODVE] human metagenome; G_DNA_Supragingival plaque
1543
1469
-
Arg
CCT
[ENA]
¢þ
>WENV180984209
ODVF01164255
[ODVF] human metagenome; G_DNA_Supragingival plaque
89
162
+
Arg
CCT
[ENA]
¢þ
>WENV180987132
ODVK01005357
[ODVK] human metagenome; G_DNA_Supragingival plaque
2
75
+
Arg
CCT
[ENA]
¢þ
>WENV180999114
ODVT01006642
[ODVT] human metagenome; G_DNA_Buccal mucosa
449
522
+
Arg
CCT
[ENA]
¢þ
>WENV181008137
ODWE01002208
[ODWE] human metagenome; G_DNA_Supragingival plaque
151
77
-
Arg
CCT
[ENA]
¢þ
>WENV181029574
ODXF01000784
[ODXF] human metagenome; G_DNA_Supragingival plaque
9500
9574
+
Arg
CCT
[ENA]
¢þ
>WENV181049944
ODYD01003558
[ODYD] human metagenome; G_DNA_Supragingival plaque
3514
3441
-
Arg
CCT
[ENA]
¢þ
>WENV181063514
ODYP01001197
[ODYP] human metagenome; G_DNA_Supragingival plaque
11898
11972
+
Arg
CCT
[ENA]
¢þ
>WENV181063524
ODYP01001300
[ODYP] human metagenome; G_DNA_Supragingival plaque
12846
12773
-
Arg
CCT
[ENA]
¢þ
>WENV181067107
ODZI01006671
[ODZI] human metagenome; G_DNA_Supragingival plaque
425
498
+
Arg
CCT
[ENA]
¢þ
>WENV181070898
OEAE01023506
[OEAE] human metagenome; G_DNA_Supragingival plaque
543
617
+
Arg
CCT
[ENA]
¢þ
>WENV181076971
OEAP01019259
[OEAP] human metagenome; G_DNA_Supragingival plaque
471
545
+
Arg
CCT
[ENA]
¢þ
>WENV181083531
OEAV01010224
[OEAV] human metagenome; G_DNA_Supragingival plaque
2835
2909
+
Arg
CCT
[ENA]
¢þ
>WENV181090732
OEBC01002907
[OEBC] human metagenome; G_DNA_Supragingival plaque
1845
1771
-
Arg
CCT
[ENA]
¢þ
>WENV181107493
OEEI01009199
[OEEI] human metagenome; G_DNA_Supragingival plaque
2838
2912
+
Arg
CCT
[ENA]
¢þ
>WENV181122171
OEFL01109873
[OEFL] human metagenome; G_DNA_Supragingival plaque
198
272
+
Arg
CCT
[ENA]
¢þ
>WENV181138036
OEGJ01082647
[OEGJ] human metagenome; G_DNA_Supragingival plaque
298
372
+
Arg
CCT
[ENA]
¢þ
>WENV181143837
OEHM01013895
[OEHM] human metagenome; G_DNA_Supragingival plaque
74
1
-
Arg
CCT
[ENA]
¢þ
>WENV181146307
OEHQ01002958
[OEHQ] human metagenome; G_DNA_Supragingival plaque
1753
1679
-
Arg
CCT
[ENA]
¢þ
>WENV181152468
OEIA01001646
[OEIA] human metagenome; G_DNA_Supragingival plaque
7767
7841
+
Arg
CCT
[ENA]
¢þ
>WENV181156268
OEIE01007582
[OEIE] human metagenome; G_DNA_Supragingival plaque
2109
2035
-
Arg
CCT
[ENA]
¢þ
>WENV181179669
OEJT01011134
[OEJT] human metagenome; G_DNA_Supragingival plaque
419
493
+
Arg
CCT
[ENA]
¢þ
>WENV181181045
OEJU01004076
[OEJU] human metagenome; G_DNA_Supragingival plaque
1972
1898
-
Arg
CCT
[ENA]
¢þ
>WENV181182229
OEJV01004091
[OEJV] human metagenome; G_DNA_Supragingival plaque
92
19
-
Arg
CCT
[ENA]
¢þ
>WENV181189460
OEOF01051744
[OEOF] activated sludge metagenome; Activated Sludge
129
202
+
Arg
CCT
[ENA]
¢þ
>WENV181193189
OEPS011585783
[OEPS] soil metagenome; soil
114
187
+
Arg
CCT
[ENA]
¢þ
>WENV181373517
OFQX01072600
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
435
363
-
Arg
CCT
[ENA]
¢þ
>WENV181376077
OFQZ01015393
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
574
647
+
Arg
CCT
[ENA]
¢þ
>W141243079
CAJC01000200
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
2096
2171
+
Arg
CCT
[ENA]
¡û
>WENV183510672
OMHQ01001817
[OMHQ] human oral metagenome; human oral
1300
1227
-
Arg
CCT
[ENA]
¢þ
>WENV183704034
PDWI01000007
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
131328
131401
+
Arg
CCT
[ENA]
¢þ
>WENV183720983
PDWJ01051245
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2146
2073
-
Arg
CCT
[ENA]
¢þ
>WENV183721060
PDWJ01053698
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
13
86
+
Arg
CCT
[ENA]
¢þ
>WENV183722382
PDWJ01124133
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1055
1128
+
Arg
CCT
[ENA]
¢þ
>WENV183748774
PPFU01078862
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1718
1791
+
Arg
CCT
[ENA]
¢þ
>WENV170010806
APMI01029702
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
280
355
+
Arg
CCT
[ENA]
¢þ
>WENV170010927
APMI01035185
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
642
717
+
Arg
CCT
[ENA]
¢þ
>WENV170011204
APMI01049795
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
967
894
-
Arg
CCT
[ENA]
¢þ
>WENV170011236
APMI01051615
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
542
617
+
Arg
CCT
[ENA]
¢þ
>WENV170011504
APMI01070163
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1
76
+
Arg
CCT
[ENA]
¢þ
>WENV170011799
APMI01091959
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
5
80
+
Arg
CCT
[ENA]
¢þ
>WENV170972817
MTKY01002614
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
10482
10407
-
Arg
CCT
[ENA]
¢þ
>WENV170979262
MTKZ01082953
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1576
1651
+
Arg
CCT
[ENA]
¢þ
>C181003390
AP017896
Actinomycetota
Actinomyces sp. Chiba101 [AP017896]
2608546
2608473
-
Arg
CCT
-
¡û
>C181062005
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
1011562
1011635
+
Arg
CCT
-
¡û
>C181160807
CP027862
Actinomycetota
Actinomyces sp. Z16 [CP027862]
3003712
3003637
-
Arg
CCT
-
¡û
>C191030341
CP025227
Actinomycetota
Actinomyces wuliandei 299 [CP025227]
2726345
2726272
-
Arg
CCT
-
¡û
>C191030393
CP025228
Actinomycetota
Actinomyces qiguomingii 410 [CP025228]
3168866
3168791
-
Arg
CCT
-
¡û
>C191164714
CP039292
Actinomycetota
Actinomyces procaprae dk561 [CP039292]
705375
705448
+
Arg
CCT
-
¡û
>W141779277
JONS01000005
Actinomycetota
Actinomyces israelii DSM 43320 [JONS]
133749
133676
-
Arg
CCT
[ENA]
¡û
>W1910281442
FQTT01000009
Actinomycetota
Actinomyces glycerinitolerans [FQTT]
593171
593246
+
Arg
CCT
[ENA]
¡û
>W1911798557
QYRR01000011
Actinomycetota
Actinomyces sp. 2119 [QYRR]
57312
57385
+
Arg
CCT
[ENA]
¡û
>W1810238735
PPPL01000080
Actinomycetota
Actinomyces qiguomingii 553 [PPPL]
93092
93167
+
Arg
CCT
[ENA]
¡û
>W1810705138
QMIN01000049
Actinomycetota
Actinomyces sp. Z5 [QMIN]
12214
12139
-
Arg
CCT
[ENA]
¡û
>W1810705212
QMIO01000052
Actinomycetota
Actinomyces sp. Z3 [QMIO]
3584
3659
+
Arg
CCT
[ENA]
¡û
>C151095932
CP012590
Actinomycetota
Actinomyces sp. oral taxon 414 F0588 [CP012590]
2819245
2819172
-
Arg
CCT
-
¡û
>W11171061
AFQC01000024
Actinomycetota
Actinomyces sp. oral taxon 448 oral taxon 448 str. F0400 [AFQC]
12140
12215
+
Arg
CCT
[ENA]
¡û
>W1610112192
CZJR01000049
Actinomycetota
Kocuria palustris [CZJR]
118582
118507
-
Arg
CCT
[ENA]
¡û
>W121081455
AKFT01000201
Actinomycetota
Actinomyces massiliensis F0489 [AKFT]
3068
2993
-
Arg
CCT
[ENA]
¡û
>W121084604
AKIO01000010
Actinomycetota
Actinomyces massiliensis 4401292 [AKIO]
194331
194406
+
Arg
CCT
[ENA]
¡û
>W1710082819
BDIO01000006
Actinomycetota
Actinomyces denticolens [BDIO]
1591344
1591417
+
Arg
CCT
[ENA]
¡û
>W1710114896
CZJR01000049
Actinomycetota
Kocuria palustris [CZJR]
118582
118507
-
Arg
CCT
[ENA]
¡û
>W1710523227
FNHU01000005
Actinomycetota
Actinomyces ruminicola [FNHU]
12915
12840
-
Arg
CCT
[ENA]
¡û
>W1710524156
FNIM01000014
Actinomycetota
Actinomyces ruminicola [FNIM]
71072
71147
+
Arg
CCT
[ENA]
¡û
>W1710587384
FQYL01000005
Actinomycetota
Actinomyces denticolens [FQYL]
149072
149145
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK