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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.246800 (83 seq.)
>W1711334220
MBQD01000026
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
20014
19939
-
Met
CAT
[ENA]
¡û
>W1711718015
MTHC01000004
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
84861
84786
-
Met
CAT
[ENA]
¡û
>C171091493
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
2579342
2579417
+
Met
CAT
-
¡û
>C171096191
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
631382
631457
+
Met
CAT
-
¡û
>C171096234
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
319714
319789
+
Met
CAT
-
¡û
>C171096320
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
702633
702558
-
Met
CAT
-
¡û
>WENV180698142
ODDE01045157
[ODDE] human metagenome; G_DNA_Supragingival plaque
220
145
-
Met
CAT
[ENA]
¢þ
>WENV180728883
ODGU01115609
[ODGU] human metagenome; G_DNA_Supragingival plaque
257
182
-
Met
CAT
[ENA]
¢þ
>WENV180734352
ODGZ01006457
[ODGZ] human metagenome; G_DNA_Supragingival plaque
3908
3983
+
Met
CAT
[ENA]
¢þ
>WENV180735680
ODHB01000254
[ODHB] human metagenome; G_DNA_Supragingival plaque
11481
11406
-
Met
CAT
[ENA]
¢þ
>WENV180750059
ODHS01000345
[ODHS] human metagenome; G_DNA_Supragingival plaque
20074
20149
+
Met
CAT
[ENA]
¢þ
>WENV180755261
ODHU01061813
[ODHU] human metagenome; G_DNA_Supragingival plaque
150
75
-
Met
CAT
[ENA]
¢þ
>WENV180777410
ODIL01004477
[ODIL] human metagenome; G_DNA_Supragingival plaque
1825
1900
+
Met
CAT
[ENA]
¢þ
>WENV180782078
ODIP01018613
[ODIP] human metagenome; G_DNA_Supragingival plaque
702
777
+
Met
CAT
[ENA]
¢þ
>WENV180787557
ODIS01008407
[ODIS] human metagenome; G_DNA_Supragingival plaque
2143
2218
+
Met
CAT
[ENA]
¢þ
>WENV180797271
ODJB01042115
[ODJB] human metagenome; G_DNA_Supragingival plaque
234
159
-
Met
CAT
[ENA]
¢þ
>WENV180801579
ODJD01060120
[ODJD] human metagenome; G_DNA_Supragingival plaque
311
236
-
Met
CAT
[ENA]
¢þ
>WENV180805027
ODJG01042525
[ODJG] human metagenome; G_DNA_Supragingival plaque
145
220
+
Met
CAT
[ENA]
¢þ
>WENV180814443
ODJO01016769
[ODJO] human metagenome; G_DNA_Supragingival plaque
2081
2156
+
Met
CAT
[ENA]
¢þ
>WENV180823442
ODJW01031844
[ODJW] human metagenome; G_DNA_Supragingival plaque
469
544
+
Met
CAT
[ENA]
¢þ
>WENV180824535
ODJX01012738
[ODJX] human metagenome; G_DNA_Supragingival plaque
465
540
+
Met
CAT
[ENA]
¢þ
>WENV180833153
ODKC01017970
[ODKC] human metagenome; G_DNA_Supragingival plaque
1229
1154
-
Met
CAT
[ENA]
¢þ
>WENV180834165
ODKD01004970
[ODKD] human metagenome; G_DNA_Supragingival plaque
2422
2497
+
Met
CAT
[ENA]
¢þ
>WENV180836172
ODKE01054037
[ODKE] human metagenome; G_DNA_Supragingival plaque
235
160
-
Met
CAT
[ENA]
¢þ
>WENV180844057
ODKN01029293
[ODKN] human metagenome; G_DNA_Supragingival plaque
715
790
+
Met
CAT
[ENA]
¢þ
>WENV180847147
ODKT01046257
[ODKT] human metagenome; G_DNA_Supragingival plaque
734
809
+
Met
CAT
[ENA]
¢þ
>WENV180859815
ODLD01004907
[ODLD] human metagenome; G_DNA_Supragingival plaque
2078
2003
-
Met
CAT
[ENA]
¢þ
>WENV180889477
ODMN01046713
[ODMN] human metagenome; G_DNA_Supragingival plaque
422
497
+
Met
CAT
[ENA]
¢þ
>WENV180922824
ODTJ01012744
[ODTJ] human metagenome; G_DNA_Supragingival plaque
264
339
+
Met
CAT
[ENA]
¢þ
>WENV180924209
ODTK01001871
[ODTK] human metagenome; G_DNA_Supragingival plaque
8528
8603
+
Met
CAT
[ENA]
¢þ
>WENV180927675
ODTM01002315
[ODTM] human metagenome; G_DNA_Supragingival plaque
7720
7795
+
Met
CAT
[ENA]
¢þ
>WENV180933341
ODTR01000037
[ODTR] human metagenome; G_DNA_Supragingival plaque
10719
10644
-
Met
CAT
[ENA]
¢þ
>WENV180934402
ODTS01000019
[ODTS] human metagenome; G_DNA_Subgingival plaque
71505
71580
+
Met
CAT
[ENA]
¢þ
>WENV180938381
ODTX01001697
[ODTX] human metagenome; G_DNA_Supragingival plaque
4404
4329
-
Met
CAT
[ENA]
¢þ
>WENV180943534
ODUC01000877
[ODUC] human metagenome; G_DNA_Supragingival plaque
1827
1752
-
Met
CAT
[ENA]
¢þ
>WENV180958742
ODUL01032473
[ODUL] human metagenome; G_DNA_Supragingival plaque
371
296
-
Met
CAT
[ENA]
¢þ
>WENV180964175
ODUO01000452
[ODUO] human metagenome; G_DNA_Supragingival plaque
11351
11276
-
Met
CAT
[ENA]
¢þ
>WENV180973542
ODUW01007885
[ODUW] human metagenome; G_DNA_Supragingival plaque
1370
1445
+
Met
CAT
[ENA]
¢þ
>WENV180980589
ODVE01000633
[ODVE] human metagenome; G_DNA_Supragingival plaque
5486
5411
-
Met
CAT
[ENA]
¢þ
>WENV180982680
ODVF01000289
[ODVF] human metagenome; G_DNA_Supragingival plaque
23738
23813
+
Met
CAT
[ENA]
¢þ
>WENV180987640
ODVK01059403
[ODVK] human metagenome; G_DNA_Supragingival plaque
178
253
+
Met
CAT
[ENA]
¢þ
>WENV180992560
ODVP01037242
[ODVP] human metagenome; G_DNA_Buccal mucosa
187
262
+
Met
CAT
[ENA]
¢þ
>WENV181000062
ODVT01183437
[ODVT] human metagenome; G_DNA_Buccal mucosa
163
238
+
Met
CAT
[ENA]
¢þ
>WENV181002105
ODVX01000019
[ODVX] human metagenome; G_DNA_Supragingival plaque
115677
115750
+
Met
CAT
[ENA]
¢þ
>WENV181009081
ODWE01028033
[ODWE] human metagenome; G_DNA_Supragingival plaque
828
903
+
Met
CAT
[ENA]
¢þ
>WENV181020259
ODWU01093428
[ODWU] human metagenome; G_DNA_Supragingival plaque
270
195
-
Met
CAT
[ENA]
¢þ
>WENV181030139
ODXF01044493
[ODXF] human metagenome; G_DNA_Supragingival plaque
217
142
-
Met
CAT
[ENA]
¢þ
>WENV181049759
ODYD01002032
[ODYD] human metagenome; G_DNA_Supragingival plaque
6147
6222
+
Met
CAT
[ENA]
¢þ
>WENV181063345
ODYP01000458
[ODYP] human metagenome; G_DNA_Supragingival plaque
18033
17958
-
Met
CAT
[ENA]
¢þ
>WENV181067936
ODZI01076858
[ODZI] human metagenome; G_DNA_Supragingival plaque
262
337
+
Met
CAT
[ENA]
¢þ
>WENV181070747
OEAE01008143
[OEAE] human metagenome; G_DNA_Supragingival plaque
541
616
+
Met
CAT
[ENA]
¢þ
>WENV181077200
OEAP01032119
[OEAP] human metagenome; G_DNA_Supragingival plaque
322
247
-
Met
CAT
[ENA]
¢þ
>WENV181080559
OEAS01057685
[OEAS] human metagenome; G_DNA_Supragingival plaque
889
964
+
Met
CAT
[ENA]
¢þ
>WENV181082573
OEAV01000089
[OEAV] human metagenome; G_DNA_Supragingival plaque
44900
44975
+
Met
CAT
[ENA]
¢þ
>WENV181091987
OEBC01168660
[OEBC] human metagenome; G_DNA_Supragingival plaque
264
339
+
Met
CAT
[ENA]
¢þ
>WENV181122062
OEFL01060840
[OEFL] human metagenome; G_DNA_Supragingival plaque
263
188
-
Met
CAT
[ENA]
¢þ
>WENV181138136
OEGJ01125648
[OEGJ] human metagenome; G_DNA_Supragingival plaque
184
109
-
Met
CAT
[ENA]
¢þ
>WENV181144103
OEHM01090458
[OEHM] human metagenome; G_DNA_Supragingival plaque
59
134
+
Met
CAT
[ENA]
¢þ
>WENV181146608
OEHQ01011615
[OEHQ] human metagenome; G_DNA_Supragingival plaque
550
475
-
Met
CAT
[ENA]
¢þ
>WENV181152754
OEIA01005531
[OEIA] human metagenome; G_DNA_Supragingival plaque
1961
1886
-
Met
CAT
[ENA]
¢þ
>WENV181156383
OEIE01012543
[OEIE] human metagenome; G_DNA_Supragingival plaque
573
648
+
Met
CAT
[ENA]
¢þ
>WENV181159197
OEIH01088692
[OEIH] human metagenome; G_DNA_Supragingival plaque
228
153
-
Met
CAT
[ENA]
¢þ
>WENV181160966
OEIK01075651
[OEIK] human metagenome; G_DNA_Supragingival plaque
316
241
-
Met
CAT
[ENA]
¢þ
>WENV181177879
OEJS01025506
[OEJS] human metagenome; G_DNA_Supragingival plaque
551
476
-
Met
CAT
[ENA]
¢þ
>WENV181179037
OEJT01001022
[OEJT] human metagenome; G_DNA_Supragingival plaque
1706
1781
+
Met
CAT
[ENA]
¢þ
>WENV181181492
OEJU01082930
[OEJU] human metagenome; G_DNA_Supragingival plaque
193
118
-
Met
CAT
[ENA]
¢þ
>WENV181181884
OEJV01000547
[OEJV] human metagenome; G_DNA_Supragingival plaque
334
259
-
Met
CAT
[ENA]
¢þ
>WENV183508528
OMHE01000075
[OMHE] human oral metagenome; human oral
2709
2784
+
Met
CAT
[ENA]
¢þ
>WENV183509213
OMHH01000438
[OMHH] human oral metagenome; human oral
2289
2214
-
Met
CAT
[ENA]
¢þ
>WENV170686889
LFRM01168716
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
351
276
-
Met
CAT
[ENA]
¢þ
>C181232191
LT996886
Actinomycetota
Tessaracoccus timonensis Marseille-P59951 [LT996886]
330059
329984
-
Met
CAT
-
¡û
>C191173849
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
2495118
2495043
-
Met
CAT
-
¡û
>C191210864
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
2473570
2473495
-
Met
CAT
-
¡û
>C191214579
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
2477263
2477188
-
Met
CAT
-
¡û
>W141557446
JHVD01000011
Actinomycetota
Propionibacteriaceae bacterium P6A17 [JHVD]
16834
16759
-
Met
CAT
[ENA]
¡û
>W1510061420
CCYJ01000020
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
995585
995510
-
Met
CAT
[ENA]
¡û
>C121002956
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
2507457
2507382
-
Met
CAT
[Ensembl]
¡û
>W1610074509
BCWS01000015
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
20029
20104
+
Met
CAT
[ENA]
¡û
>W1611066187
MBQD01000026
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
20014
19939
-
Met
CAT
[ENA]
¡û
>W1710071627
BCWS01000015
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
20029
20104
+
Met
CAT
[ENA]
¡û
>W1710521709
FNGP01000003
Actinomycetota
Tessaracoccus oleiagri [FNGP]
171651
171726
+
Met
CAT
[ENA]
¡û
>W1710531759
FNPU01000001
Actinomycetota
Tessaracoccus flavus [FNPU]
168977
169052
+
Met
CAT
[ENA]
¡û
>W1710588324
FQZG01000014
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
9107
9032
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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