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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.246806 (91 seq.)
>W1711334202
MBQD01000021
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
20287
20362
+
Thr
TGT
[ENA]
¡û
>W1711718026
MTHC01000021
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
12869
12942
+
Thr
TGT
[ENA]
¡û
>C171091485
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
1105680
1105755
+
Thr
TGT
-
¡û
>C171096205
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
2397819
2397894
+
Thr
TGT
-
¡û
>C171096246
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
2508218
2508293
+
Thr
TGT
-
¡û
>C171096311
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
2314728
2314653
-
Thr
TGT
-
¡û
>WENV180728486
ODGU01052694
[ODGU] human metagenome; G_DNA_Supragingival plaque
515
589
+
Thr
TGT
[ENA]
¢þ
>WENV180732029
ODGW01080083
[ODGW] human metagenome; G_DNA_Supragingival plaque
148
75
-
Thr
TGT
[ENA]
¢þ
>WENV180733923
ODGZ01001421
[ODGZ] human metagenome; G_DNA_Supragingival plaque
11778
11703
-
Thr
TGT
[ENA]
¢þ
>WENV180734072
ODGZ01002378
[ODGZ] human metagenome; G_DNA_Supragingival plaque
4524
4597
+
Thr
TGT
[ENA]
¢þ
>WENV180735847
ODHB01001023
[ODHB] human metagenome; G_DNA_Supragingival plaque
7326
7252
-
Thr
TGT
[ENA]
¢þ
>WENV180749879
ODHS01000064
[ODHS] human metagenome; G_DNA_Supragingival plaque
56091
56017
-
Thr
TGT
[ENA]
¢þ
>WENV180755073
ODHU01012133
[ODHU] human metagenome; G_DNA_Supragingival plaque
249
175
-
Thr
TGT
[ENA]
¢þ
>WENV180777140
ODIL01000141
[ODIL] human metagenome; G_DNA_Supragingival plaque
12605
12531
-
Thr
TGT
[ENA]
¢þ
>WENV180778608
ODIM01021367
[ODIM] human metagenome; G_DNA_Supragingival plaque
524
597
+
Thr
TGT
[ENA]
¢þ
>WENV180782038
ODIP01015118
[ODIP] human metagenome; G_DNA_Supragingival plaque
637
562
-
Thr
TGT
[ENA]
¢þ
>WENV180788543
ODIS01074556
[ODIS] human metagenome; G_DNA_Supragingival plaque
574
500
-
Thr
TGT
[ENA]
¢þ
>WENV180796781
ODJB01013600
[ODJB] human metagenome; G_DNA_Supragingival plaque
716
789
+
Thr
TGT
[ENA]
¢þ
>WENV180804555
ODJG01005492
[ODJG] human metagenome; G_DNA_Supragingival plaque
2650
2576
-
Thr
TGT
[ENA]
¢þ
>WENV180804906
ODJG01020950
[ODJG] human metagenome; G_DNA_Supragingival plaque
32
107
+
Thr
TGT
[ENA]
¢þ
>WENV180823219
ODJW01009105
[ODJW] human metagenome; G_DNA_Supragingival plaque
307
234
-
Thr
TGT
[ENA]
¢þ
>WENV180824650
ODJX01024233
[ODJX] human metagenome; G_DNA_Supragingival plaque
299
226
-
Thr
TGT
[ENA]
¢þ
>WENV180832968
ODKC01009119
[ODKC] human metagenome; G_DNA_Supragingival plaque
1364
1439
+
Thr
TGT
[ENA]
¢þ
>WENV180834120
ODKD01003403
[ODKD] human metagenome; G_DNA_Supragingival plaque
2593
2519
-
Thr
TGT
[ENA]
¢þ
>WENV180836078
ODKE01036445
[ODKE] human metagenome; G_DNA_Supragingival plaque
485
560
+
Thr
TGT
[ENA]
¢þ
>WENV180843668
ODKN01007397
[ODKN] human metagenome; G_DNA_Supragingival plaque
1611
1686
+
Thr
TGT
[ENA]
¢þ
>WENV180846256
ODKT01007850
[ODKT] human metagenome; G_DNA_Supragingival plaque
1594
1668
+
Thr
TGT
[ENA]
¢þ
>WENV180847574
ODKT01109206
[ODKT] human metagenome; G_DNA_Supragingival plaque
482
555
+
Thr
TGT
[ENA]
¢þ
>WENV180859511
ODLD01001020
[ODLD] human metagenome; G_DNA_Supragingival plaque
4672
4599
-
Thr
TGT
[ENA]
¢þ
>WENV180889730
ODMN01117579
[ODMN] human metagenome; G_DNA_Supragingival plaque
141
216
+
Thr
TGT
[ENA]
¢þ
>WENV180922387
ODTJ01003364
[ODTJ] human metagenome; G_DNA_Supragingival plaque
5159
5086
-
Thr
TGT
[ENA]
¢þ
>WENV180924265
ODTK01002360
[ODTK] human metagenome; G_DNA_Supragingival plaque
8196
8269
+
Thr
TGT
[ENA]
¢þ
>WENV180927985
ODTM01009143
[ODTM] human metagenome; G_DNA_Supragingival plaque
2822
2895
+
Thr
TGT
[ENA]
¢þ
>WENV180928182
ODTM01018866
[ODTM] human metagenome; G_DNA_Supragingival plaque
1335
1261
-
Thr
TGT
[ENA]
¢þ
>WENV180933320
ODTR01000027
[ODTR] human metagenome; G_DNA_Supragingival plaque
16949
17023
+
Thr
TGT
[ENA]
¢þ
>WENV180934399
ODTS01000017
[ODTS] human metagenome; G_DNA_Subgingival plaque
16964
17038
+
Thr
TGT
[ENA]
¢þ
>WENV180938584
ODTX01003714
[ODTX] human metagenome; G_DNA_Supragingival plaque
4805
4732
-
Thr
TGT
[ENA]
¢þ
>WENV180939004
ODTX01012112
[ODTX] human metagenome; G_DNA_Supragingival plaque
955
881
-
Thr
TGT
[ENA]
¢þ
>WENV180939229
ODTX01021382
[ODTX] human metagenome; G_DNA_Supragingival plaque
956
1031
+
Thr
TGT
[ENA]
¢þ
>WENV180944241
ODUC01011080
[ODUC] human metagenome; G_DNA_Supragingival plaque
2923
2997
+
Thr
TGT
[ENA]
¢þ
>WENV180944716
ODUC01030670
[ODUC] human metagenome; G_DNA_Supragingival plaque
417
490
+
Thr
TGT
[ENA]
¢þ
>WENV180958340
ODUL01003141
[ODUL] human metagenome; G_DNA_Supragingival plaque
3074
3000
-
Thr
TGT
[ENA]
¢þ
>WENV180963864
ODUO01000012
[ODUO] human metagenome; G_DNA_Supragingival plaque
86086
86160
+
Thr
TGT
[ENA]
¢þ
>WENV180973670
ODUW01011955
[ODUW] human metagenome; G_DNA_Supragingival plaque
2029
2103
+
Thr
TGT
[ENA]
¢þ
>WENV180981100
ODVE01006917
[ODVE] human metagenome; G_DNA_Supragingival plaque
2317
2390
+
Thr
TGT
[ENA]
¢þ
>WENV180982550
ODVF01000083
[ODVF] human metagenome; G_DNA_Supragingival plaque
35906
35979
+
Thr
TGT
[ENA]
¢þ
>WENV180987835
ODVK01183908
[ODVK] human metagenome; G_DNA_Supragingival plaque
108
34
-
Thr
TGT
[ENA]
¢þ
>WENV180999992
ODVT01133979
[ODVT] human metagenome; G_DNA_Buccal mucosa
136
209
+
Thr
TGT
[ENA]
¢þ
>WENV181002280
ODVX01000169
[ODVX] human metagenome; G_DNA_Supragingival plaque
44022
43948
-
Thr
TGT
[ENA]
¢þ
>WENV181008412
ODWE01005043
[ODWE] human metagenome; G_DNA_Supragingival plaque
3834
3759
-
Thr
TGT
[ENA]
¢þ
>WENV181008644
ODWE01009731
[ODWE] human metagenome; G_DNA_Supragingival plaque
2651
2577
-
Thr
TGT
[ENA]
¢þ
>WENV181008697
ODWE01011286
[ODWE] human metagenome; G_DNA_Supragingival plaque
1609
1682
+
Thr
TGT
[ENA]
¢þ
>WENV181012828
ODWK01034949
[ODWK] human metagenome; G_DNA_Supragingival plaque
235
162
-
Thr
TGT
[ENA]
¢þ
>WENV181020332
ODWU01123237
[ODWU] human metagenome; G_DNA_Supragingival plaque
117
192
+
Thr
TGT
[ENA]
¢þ
>WENV181030002
ODXF01016956
[ODXF] human metagenome; G_DNA_Supragingival plaque
255
328
+
Thr
TGT
[ENA]
¢þ
>WENV181050007
ODYD01004486
[ODYD] human metagenome; G_DNA_Supragingival plaque
3050
2976
-
Thr
TGT
[ENA]
¢þ
>WENV181050833
ODYD01070234
[ODYD] human metagenome; G_DNA_Supragingival plaque
543
616
+
Thr
TGT
[ENA]
¢þ
>WENV181063194
ODYP01000194
[ODYP] human metagenome; G_DNA_Supragingival plaque
40083
40156
+
Thr
TGT
[ENA]
¢þ
>WENV181067636
ODZI01032944
[ODZI] human metagenome; G_DNA_Supragingival plaque
590
517
-
Thr
TGT
[ENA]
¢þ
>WENV181070762
OEAE01008927
[OEAE] human metagenome; G_DNA_Supragingival plaque
2088
2015
-
Thr
TGT
[ENA]
¢þ
>WENV181076431
OEAP01005291
[OEAP] human metagenome; G_DNA_Supragingival plaque
3297
3371
+
Thr
TGT
[ENA]
¢þ
>WENV181082564
OEAV01000078
[OEAV] human metagenome; G_DNA_Supragingival plaque
43525
43600
+
Thr
TGT
[ENA]
¢þ
>WENV181091558
OEBC01048765
[OEBC] human metagenome; G_DNA_Supragingival plaque
507
582
+
Thr
TGT
[ENA]
¢þ
>WENV181121891
OEFL01027968
[OEFL] human metagenome; G_DNA_Supragingival plaque
432
507
+
Thr
TGT
[ENA]
¢þ
>WENV181137757
OEGJ01021506
[OEGJ] human metagenome; G_DNA_Supragingival plaque
744
819
+
Thr
TGT
[ENA]
¢þ
>WENV181144079
OEHM01078947
[OEHM] human metagenome; G_DNA_Supragingival plaque
16
89
+
Thr
TGT
[ENA]
¢þ
>WENV181145983
OEHQ01000376
[OEHQ] human metagenome; G_DNA_Supragingival plaque
18793
18719
-
Thr
TGT
[ENA]
¢þ
>WENV181146554
OEHQ01009484
[OEHQ] human metagenome; G_DNA_Supragingival plaque
1664
1737
+
Thr
TGT
[ENA]
¢þ
>WENV181152636
OEIA01003429
[OEIA] human metagenome; G_DNA_Supragingival plaque
5750
5823
+
Thr
TGT
[ENA]
¢þ
>WENV181156330
OEIE01009751
[OEIE] human metagenome; G_DNA_Supragingival plaque
1385
1459
+
Thr
TGT
[ENA]
¢þ
>WENV181160954
OEIK01071306
[OEIK] human metagenome; G_DNA_Supragingival plaque
243
168
-
Thr
TGT
[ENA]
¢þ
>WENV181177400
OEJS01001456
[OEJS] human metagenome; G_DNA_Supragingival plaque
6833
6759
-
Thr
TGT
[ENA]
¢þ
>WENV181179279
OEJT01002715
[OEJT] human metagenome; G_DNA_Supragingival plaque
5125
5052
-
Thr
TGT
[ENA]
¢þ
>WENV181181714
OEJV01000101
[OEJV] human metagenome; G_DNA_Supragingival plaque
1392
1466
+
Thr
TGT
[ENA]
¢þ
>WENV183508537
OMHE01000216
[OMHE] human oral metagenome; human oral
2976
2901
-
Thr
TGT
[ENA]
¢þ
>WENV183509242
OMHH01001665
[OMHH] human oral metagenome; human oral
1503
1429
-
Thr
TGT
[ENA]
¢þ
>WENV183707984
PDWI01012023
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
11219
11144
-
Thr
TGT
[ENA]
¢þ
>WENV183710006
PDWI01038010
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2942
3015
+
Thr
TGT
[ENA]
¢þ
>WENV183712382
PDWI01098076
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1915
1988
+
Thr
TGT
[ENA]
¢þ
>WENV183718163
PDWJ01002639
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9721
9646
-
Thr
TGT
[ENA]
¢þ
>WENV183718164
PDWJ01002643
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1484
1411
-
Thr
TGT
[ENA]
¢þ
>WENV183722495
PDWJ01134243
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
911
986
+
Thr
TGT
[ENA]
¢þ
>C191173863
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
769083
769010
-
Thr
TGT
-
¡û
>C191210878
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
766441
766368
-
Thr
TGT
-
¡û
>C191214593
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
781500
781427
-
Thr
TGT
-
¡û
>C121002970
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
770184
770111
-
Thr
TGT
[Ensembl]
¡û
>W1610074493
BCWS01000004
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
345888
345961
+
Thr
TGT
[ENA]
¡û
>W1611066169
MBQD01000021
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
20287
20362
+
Thr
TGT
[ENA]
¡û
>W1710071611
BCWS01000004
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
345888
345961
+
Thr
TGT
[ENA]
¡û
>W1710531774
FNPU01000002
Actinomycetota
Tessaracoccus flavus [FNPU]
62957
62882
-
Thr
TGT
[ENA]
¡û
>W1710588312
FQZG01000003
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
96336
96411
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK