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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.246807 (99 seq.)
>W1711334179
MBQD01000002
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
33160
33087
-
Ala
TGC
[ENA]
¡û
>W1711718020
MTHC01000007
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
33241
33316
+
Ala
TGC
[ENA]
¡û
>C171091486
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
1769298
1769371
+
Ala
TGC
-
¡û
>C171096209
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
2929681
2929606
-
Ala
TGC
-
¡û
>C171096257
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
3136391
3136318
-
Ala
TGC
-
¡û
>C171096288
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
1642266
1642339
+
Ala
TGC
-
¡û
>WENV180285843
OBID01753264
[OBID] metagenome; sludge
88
161
+
Ala
TGC
[ENA]
¢þ
>WENV180697697
ODDE01003057
[ODDE] human metagenome; G_DNA_Supragingival plaque
4233
4160
-
Ala
TGC
[ENA]
¢þ
>WENV180727862
ODGU01014098
[ODGU] human metagenome; G_DNA_Supragingival plaque
3203
3128
-
Ala
TGC
[ENA]
¢þ
>WENV180731911
ODGW01035346
[ODGW] human metagenome; G_DNA_Supragingival plaque
274
347
+
Ala
TGC
[ENA]
¢þ
>WENV180734824
ODGZ01026805
[ODGZ] human metagenome; G_DNA_Supragingival plaque
75
2
-
Ala
TGC
[ENA]
¢þ
>WENV180735683
ODHB01000269
[ODHB] human metagenome; G_DNA_Supragingival plaque
736
811
+
Ala
TGC
[ENA]
¢þ
>WENV180749938
ODHS01000140
[ODHS] human metagenome; G_DNA_Supragingival plaque
14570
14645
+
Ala
TGC
[ENA]
¢þ
>WENV180754876
ODHU01002272
[ODHU] human metagenome; G_DNA_Supragingival plaque
3597
3522
-
Ala
TGC
[ENA]
¢þ
>WENV180777644
ODIL01038785
[ODIL] human metagenome; G_DNA_Supragingival plaque
100
175
+
Ala
TGC
[ENA]
¢þ
>WENV180778494
ODIM01009773
[ODIM] human metagenome; G_DNA_Supragingival plaque
354
427
+
Ala
TGC
[ENA]
¢þ
>WENV180782096
ODIP01019929
[ODIP] human metagenome; G_DNA_Supragingival plaque
330
403
+
Ala
TGC
[ENA]
¢þ
>WENV180788849
ODIS01131942
[ODIS] human metagenome; G_DNA_Supragingival plaque
76
3
-
Ala
TGC
[ENA]
¢þ
>WENV180796461
ODJB01005030
[ODJB] human metagenome; G_DNA_Supragingival plaque
206
279
+
Ala
TGC
[ENA]
¢þ
>WENV180801203
ODJD01013130
[ODJD] human metagenome; G_DNA_Supragingival plaque
301
374
+
Ala
TGC
[ENA]
¢þ
>WENV180804224
ODJG01001174
[ODJG] human metagenome; G_DNA_Supragingival plaque
2
77
+
Ala
TGC
[ENA]
¢þ
>WENV180804629
ODJG01007739
[ODJG] human metagenome; G_DNA_Supragingival plaque
913
986
+
Ala
TGC
[ENA]
¢þ
>WENV180804950
ODJG01026346
[ODJG] human metagenome; G_DNA_Supragingival plaque
356
429
+
Ala
TGC
[ENA]
¢þ
>WENV180813477
ODJO01000819
[ODJO] human metagenome; G_DNA_Supragingival plaque
18181
18106
-
Ala
TGC
[ENA]
¢þ
>WENV180823116
ODJW01005650
[ODJW] human metagenome; G_DNA_Supragingival plaque
420
493
+
Ala
TGC
[ENA]
¢þ
>WENV180824573
ODJX01015322
[ODJX] human metagenome; G_DNA_Supragingival plaque
808
735
-
Ala
TGC
[ENA]
¢þ
>WENV180833335
ODKC01032742
[ODKC] human metagenome; G_DNA_Supragingival plaque
74
1
-
Ala
TGC
[ENA]
¢þ
>WENV180834313
ODKD01011139
[ODKD] human metagenome; G_DNA_Supragingival plaque
1421
1494
+
Ala
TGC
[ENA]
¢þ
>WENV180835546
ODKE01004759
[ODKE] human metagenome; G_DNA_Supragingival plaque
3990
3917
-
Ala
TGC
[ENA]
¢þ
>WENV180844359
ODKN01086511
[ODKN] human metagenome; G_DNA_Supragingival plaque
74
1
-
Ala
TGC
[ENA]
¢þ
>WENV180847857
ODKT01217656
[ODKT] human metagenome; G_DNA_Supragingival plaque
230
303
+
Ala
TGC
[ENA]
¢þ
>WENV180859446
ODLD01000703
[ODLD] human metagenome; G_DNA_Supragingival plaque
1686
1759
+
Ala
TGC
[ENA]
¢þ
>WENV180889306
ODMN01028128
[ODMN] human metagenome; G_DNA_Supragingival plaque
996
923
-
Ala
TGC
[ENA]
¢þ
>WENV180891964
ODMQ01065282
[ODMQ] human metagenome; G_DNA_Supragingival plaque
19
92
+
Ala
TGC
[ENA]
¢þ
>WENV180922429
ODTJ01003944
[ODTJ] human metagenome; G_DNA_Supragingival plaque
1362
1435
+
Ala
TGC
[ENA]
¢þ
>WENV180924341
ODTK01003472
[ODTK] human metagenome; G_DNA_Supragingival plaque
5430
5357
-
Ala
TGC
[ENA]
¢þ
>WENV180927387
ODTM01000368
[ODTM] human metagenome; G_DNA_Supragingival plaque
11289
11364
+
Ala
TGC
[ENA]
¢þ
>WENV180927949
ODTM01008007
[ODTM] human metagenome; G_DNA_Supragingival plaque
3126
3199
+
Ala
TGC
[ENA]
¢þ
>WENV180933304
ODTR01000018
[ODTR] human metagenome; G_DNA_Supragingival plaque
83830
83905
+
Ala
TGC
[ENA]
¢þ
>WENV180934390
ODTS01000008
[ODTS] human metagenome; G_DNA_Subgingival plaque
14743
14818
+
Ala
TGC
[ENA]
¢þ
>WENV180938214
ODTX01000927
[ODTX] human metagenome; G_DNA_Supragingival plaque
4816
4891
+
Ala
TGC
[ENA]
¢þ
>WENV180938910
ODTX01009748
[ODTX] human metagenome; G_DNA_Supragingival plaque
1398
1325
-
Ala
TGC
[ENA]
¢þ
>WENV180943918
ODUC01004250
[ODUC] human metagenome; G_DNA_Supragingival plaque
1111
1184
+
Ala
TGC
[ENA]
¢þ
>WENV180944401
ODUC01016340
[ODUC] human metagenome; G_DNA_Supragingival plaque
1119
1046
-
Ala
TGC
[ENA]
¢þ
>WENV180958134
ODUL01000567
[ODUL] human metagenome; G_DNA_Supragingival plaque
4748
4673
-
Ala
TGC
[ENA]
¢þ
>WENV180964145
ODUO01000349
[ODUO] human metagenome; G_DNA_Supragingival plaque
22210
22135
-
Ala
TGC
[ENA]
¢þ
>WENV180973909
ODUW01026396
[ODUW] human metagenome; G_DNA_Supragingival plaque
1006
933
-
Ala
TGC
[ENA]
¢þ
>WENV180981338
ODVE01016437
[ODVE] human metagenome; G_DNA_Supragingival plaque
648
575
-
Ala
TGC
[ENA]
¢þ
>WENV180982892
ODVF01001313
[ODVF] human metagenome; G_DNA_Supragingival plaque
565
492
-
Ala
TGC
[ENA]
¢þ
>WENV180987844
ODVK01187647
[ODVK] human metagenome; G_DNA_Supragingival plaque
103
176
+
Ala
TGC
[ENA]
¢þ
>WENV180999598
ODVT01035140
[ODVT] human metagenome; G_DNA_Buccal mucosa
706
633
-
Ala
TGC
[ENA]
¢þ
>WENV181002765
ODVX01001592
[ODVX] human metagenome; G_DNA_Supragingival plaque
11956
12029
+
Ala
TGC
[ENA]
¢þ
>WENV181008197
ODWE01002729
[ODWE] human metagenome; G_DNA_Supragingival plaque
4792
4867
+
Ala
TGC
[ENA]
¢þ
>WENV181008212
ODWE01002866
[ODWE] human metagenome; G_DNA_Supragingival plaque
6207
6134
-
Ala
TGC
[ENA]
¢þ
>WENV181009061
ODWE01026938
[ODWE] human metagenome; G_DNA_Supragingival plaque
965
892
-
Ala
TGC
[ENA]
¢þ
>WENV181009263
ODWE01044438
[ODWE] human metagenome; G_DNA_Supragingival plaque
963
890
-
Ala
TGC
[ENA]
¢þ
>WENV181012717
ODWK01009578
[ODWK] human metagenome; G_DNA_Supragingival plaque
256
329
+
Ala
TGC
[ENA]
¢þ
>WENV181020253
ODWU01092136
[ODWU] human metagenome; G_DNA_Supragingival plaque
328
255
-
Ala
TGC
[ENA]
¢þ
>WENV181029885
ODXF01008136
[ODXF] human metagenome; G_DNA_Supragingival plaque
1389
1316
-
Ala
TGC
[ENA]
¢þ
>WENV181049514
ODYD01000444
[ODYD] human metagenome; G_DNA_Supragingival plaque
19393
19318
-
Ala
TGC
[ENA]
¢þ
>WENV181050903
ODYD01087681
[ODYD] human metagenome; G_DNA_Supragingival plaque
249
176
-
Ala
TGC
[ENA]
¢þ
>WENV181063353
ODYP01000471
[ODYP] human metagenome; G_DNA_Supragingival plaque
1684
1611
-
Ala
TGC
[ENA]
¢þ
>WENV181068198
ODZI01165469
[ODZI] human metagenome; G_DNA_Supragingival plaque
84
11
-
Ala
TGC
[ENA]
¢þ
>WENV181070671
OEAE01005498
[OEAE] human metagenome; G_DNA_Supragingival plaque
3278
3203
-
Ala
TGC
[ENA]
¢þ
>WENV181077830
OEAP01169041
[OEAP] human metagenome; G_DNA_Supragingival plaque
206
279
+
Ala
TGC
[ENA]
¢þ
>WENV181078826
OEAS01000658
[OEAS] human metagenome; G_DNA_Supragingival plaque
15716
15641
-
Ala
TGC
[ENA]
¢þ
>WENV181078901
OEAS01000980
[OEAS] human metagenome; G_DNA_Supragingival plaque
2048
1975
-
Ala
TGC
[ENA]
¢þ
>WENV181082788
OEAV01000594
[OEAV] human metagenome; G_DNA_Supragingival plaque
1317
1390
+
Ala
TGC
[ENA]
¢þ
>WENV181091213
OEBC01017652
[OEBC] human metagenome; G_DNA_Supragingival plaque
1886
1813
-
Ala
TGC
[ENA]
¢þ
>WENV181107958
OEEI01041961
[OEEI] human metagenome; G_DNA_Supragingival plaque
103
176
+
Ala
TGC
[ENA]
¢þ
>WENV181121714
OEFL01015772
[OEFL] human metagenome; G_DNA_Supragingival plaque
564
637
+
Ala
TGC
[ENA]
¢þ
>WENV181137472
OEGJ01004583
[OEGJ] human metagenome; G_DNA_Supragingival plaque
131
205
+
Ala
TGC
[ENA]
¢þ
>WENV181143856
OEHM01016380
[OEHM] human metagenome; G_DNA_Supragingival plaque
1059
986
-
Ala
TGC
[ENA]
¢þ
>WENV181146375
OEHQ01004062
[OEHQ] human metagenome; G_DNA_Supragingival plaque
4869
4942
+
Ala
TGC
[ENA]
¢þ
>WENV181152638
OEIA01003473
[OEIA] human metagenome; G_DNA_Supragingival plaque
5131
5058
-
Ala
TGC
[ENA]
¢þ
>WENV181156339
OEIE01010044
[OEIE] human metagenome; G_DNA_Supragingival plaque
1302
1375
+
Ala
TGC
[ENA]
¢þ
>WENV181158957
OEIH01021682
[OEIH] human metagenome; G_DNA_Supragingival plaque
158
231
+
Ala
TGC
[ENA]
¢þ
>WENV181160522
OEIK01012250
[OEIK] human metagenome; G_DNA_Supragingival plaque
236
310
+
Ala
TGC
[ENA]
¢þ
>WENV181177278
OEJS01000375
[OEJS] human metagenome; G_DNA_Supragingival plaque
725
800
+
Ala
TGC
[ENA]
¢þ
>WENV181179310
OEJT01003099
[OEJT] human metagenome; G_DNA_Supragingival plaque
1463
1536
+
Ala
TGC
[ENA]
¢þ
>WENV181181678
OEJV01000062
[OEJV] human metagenome; G_DNA_Supragingival plaque
750
677
-
Ala
TGC
[ENA]
¢þ
>WENV181181737
OEJV01000141
[OEJV] human metagenome; G_DNA_Supragingival plaque
8486
8413
-
Ala
TGC
[ENA]
¢þ
>WENV182855318
OKMY01006767
[OKMY] human gut metagenome; human gut
328
255
-
Ala
TGC
[ENA]
¢þ
>WENV183508561
OMHE01001216
[OMHE] human oral metagenome; human oral
1301
1374
+
Ala
TGC
[ENA]
¢þ
>WENV170689607
LFRM01303366
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1041
1114
+
Ala
TGC
[ENA]
¢þ
>C181232155
LT996886
Actinomycetota
Tessaracoccus timonensis Marseille-P59951 [LT996886]
985462
985535
+
Ala
TGC
-
¡û
>C191173864
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
77555
77482
-
Ala
TGC
-
¡û
>C191210879
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
80519
80446
-
Ala
TGC
-
¡û
>C191214594
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
84780
84707
-
Ala
TGC
-
¡û
>W141557453
JHVD01000027
Actinomycetota
Propionibacteriaceae bacterium P6A17 [JHVD]
9442
9367
-
Ala
TGC
[ENA]
¡û
>W1510061401
CCYJ01000018
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
635979
636054
+
Ala
TGC
[ENA]
¡û
>C121002971
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
77772
77697
-
Ala
TGC
[Ensembl]
¡û
>W1610074483
BCWS01000002
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
387047
387122
+
Ala
TGC
[ENA]
¡û
>W1611066146
MBQD01000002
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
33160
33087
-
Ala
TGC
[ENA]
¡û
>W1710071601
BCWS01000002
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
387047
387122
+
Ala
TGC
[ENA]
¡û
>W1710510806
FMYF01000012
Actinomycetota
Raineyella antarctica [FMYF]
36852
36925
+
Ala
TGC
[ENA]
¡û
>W1710521690
FNGP01000001
Actinomycetota
Tessaracoccus oleiagri [FNGP]
768008
767933
-
Ala
TGC
[ENA]
¡û
>W1710531796
FNPU01000011
Actinomycetota
Tessaracoccus flavus [FNPU]
96073
96148
+
Ala
TGC
[ENA]
¡û
>W1710588327
FQZG01000022
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
20035
20108
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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