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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247034 (35 seq.)
>WENV180223527
OBBG01045660
[OBBG] human gut metagenome; human gut
192
267
+
Gln
TTG
[ENA]
¢þ
>WENV180246943
OBDQ01028090
[OBDQ] human gut metagenome; human gut
96
21
-
Gln
TTG
[ENA]
¢þ
>WENV180322867
OBKR01007623
[OBKR] human gut metagenome; feces
252
177
-
Gln
TTG
[ENA]
¢þ
>WENV180542936
OCHT01036901
[OCHT] human gut metagenome; human gut
226
151
-
Gln
TTG
[ENA]
¢þ
>WENV180572758
OCLU01134260
[OCLU] human gut metagenome; human gut
208
133
-
Gln
TTG
[ENA]
¢þ
>WENV180627381
OCQM01157954
[OCQM] human gut metagenome; human gut
104
29
-
Gln
TTG
[ENA]
¢þ
>WENV180628198
OCQO01068020
[OCQO] human gut metagenome; human gut
330
405
+
Gln
TTG
[ENA]
¢þ
>WENV180633840
OCRA01072949
[OCRA] human gut metagenome; human gut
297
372
+
Gln
TTG
[ENA]
¢þ
>WENV180650910
OCSZ01040807
[OCSZ] human gut metagenome; human gut
348
423
+
Gln
TTG
[ENA]
¢þ
>WENV180730026
ODGV01001132
[ODGV] human metagenome; G_DNA_Stool
4315
4390
+
Gln
TTG
[ENA]
¢þ
>WENV180799412
ODJC01006551
[ODJC] human metagenome; G_DNA_Stool
4776
4851
+
Gln
TTG
[ENA]
¢þ
>WENV180828522
ODKA01012034
[ODKA] human metagenome; G_DNA_Stool
253
178
-
Gln
TTG
[ENA]
¢þ
>WENV180838537
ODKG01114632
[ODKG] human metagenome; G_DNA_Stool
53
128
+
Gln
TTG
[ENA]
¢þ
>WENV180848942
ODKV01000014
[ODKV] human metagenome; G_DNA_Stool
66515
66590
+
Gln
TTG
[ENA]
¢þ
>WENV180870238
ODLN01001081
[ODLN] human metagenome; G_DNA_Stool
25370
25295
-
Gln
TTG
[ENA]
¢þ
>WENV180936349
ODTU01005067
[ODTU] human metagenome; G_DNA_Stool
4320
4395
+
Gln
TTG
[ENA]
¢þ
>WENV180997599
ODVS01044657
[ODVS] human metagenome; G_DNA_Stool
346
271
-
Gln
TTG
[ENA]
¢þ
>WENV181029086
ODXE01124153
[ODXE] human metagenome; G_DNA_Stool
173
98
-
Gln
TTG
[ENA]
¢þ
>WENV181049145
ODYC01131297
[ODYC] human metagenome; G_DNA_Stool
240
165
-
Gln
TTG
[ENA]
¢þ
>WENV181060566
ODYN01000061
[ODYN] human metagenome; G_DNA_Stool
132221
132296
+
Gln
TTG
[ENA]
¢þ
>WENV181110792
OEEK01009976
[OEEK] human metagenome; G_DNA_Stool
3267
3192
-
Gln
TTG
[ENA]
¢þ
>WENV181118825
OEFH01038120
[OEFH] human metagenome; G_DNA_Stool
254
179
-
Gln
TTG
[ENA]
¢þ
>WENV181492267
OGFY01007039
[OGFY] metagenome; Human gut stool
3910
3985
+
Gln
TTG
[ENA]
¢þ
>WENV181702013
OGPH01012486
[OGPH] human gut metagenome; faeces
1895
1820
-
Gln
TTG
[ENA]
¢þ
>WENV181763489
OGQX01006740
[OGQX] human gut metagenome; faeces
5366
5441
+
Gln
TTG
[ENA]
¢þ
>WENV181830640
OGUO01007607
[OGUO] human gut metagenome; faeces
4425
4500
+
Gln
TTG
[ENA]
¢þ
>WENV182639322
OJLA01058526
[OJLA] metagenome; faeces
282
207
-
Gln
TTG
[ENA]
¢þ
>WENV182649289
OJMG01005176
[OJMG] human gut metagenome; feces
6245
6320
+
Gln
TTG
[ENA]
¢þ
>WENV182651706
OJMH01003495
[OJMH] human gut metagenome; feces
9380
9305
-
Gln
TTG
[ENA]
¢þ
>WENV182655640
OJMI01062545
[OJMI] human gut metagenome; feces
299
224
-
Gln
TTG
[ENA]
¢þ
>WENV182676083
OJNQ01042871
[OJNQ] human gut metagenome; feces
334
259
-
Gln
TTG
[ENA]
¢þ
>WENV183085201
OLJF01002067
[OLJF] metagenome; faeces
10358
10283
-
Gln
TTG
[ENA]
¢þ
>WENV183363355
OLXL01001349
[OLXL] human gut metagenome; feces
687
612
-
Gln
TTG
[ENA]
¢þ
>WENV183493330
OMGI01034249
[OMGI] human gut metagenome; human gut
293
368
+
Gln
TTG
[ENA]
¢þ
>WENV170050947
CDZB01049544
[CDZB] gut metagenome; human stools
167
242
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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