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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247145 (12 seq.)
>WENV180727861
ODGU01014095
[ODGU] human metagenome; G_DNA_Supragingival plaque
1756
1681
-
Arg
TCG
[ENA]
¢þ
>WENV180735147
ODGZ01074692
[ODGZ] human metagenome; G_DNA_Supragingival plaque
56
131
+
Arg
TCG
[ENA]
¢þ
>WENV180808946
ODJK01002148
[ODJK] human metagenome; G_DNA_Subgingival plaque
7510
7585
+
Arg
TCG
[ENA]
¢þ
>WENV180845800
ODKT01002222
[ODKT] human metagenome; G_DNA_Supragingival plaque
5156
5081
-
Arg
TCG
[ENA]
¢þ
>WENV180950444
ODUH01000002
[ODUH] human metagenome; G_DNA_Subgingival plaque
16254
16329
+
Arg
TCG
[ENA]
¢þ
>WENV180982245
ODVE01249665
[ODVE] human metagenome; G_DNA_Supragingival plaque
93
18
-
Arg
TCG
[ENA]
¢þ
>WENV181091852
OEBC01106935
[OEBC] human metagenome; G_DNA_Supragingival plaque
25
100
+
Arg
TCG
[ENA]
¢þ
>WENV181146727
OEHQ01020363
[OEHQ] human metagenome; G_DNA_Supragingival plaque
497
422
-
Arg
TCG
[ENA]
¢þ
>WENV181153636
OEIA01184833
[OEIA] human metagenome; G_DNA_Supragingival plaque
239
164
-
Arg
TCG
[ENA]
¢þ
>WENV181159287
OEIH01138998
[OEIH] human metagenome; G_DNA_Supragingival plaque
69
144
+
Arg
TCG
[ENA]
¢þ
>WENV181183110
OEJV01198286
[OEJV] human metagenome; G_DNA_Supragingival plaque
114
39
-
Arg
TCG
[ENA]
¢þ
>W141167345
AXUD01000001
Bacillota
[Eubacterium] brachy ATCC 33089 [AXUD]
70501
70426
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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