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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247224 (92 seq.)
>W1710785713
LJIC01000058
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
5540
5615
+
Thr
CGT
[ENA]
¡û
>W1711129932
LUUM01000004
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
4791
4716
-
Thr
CGT
[ENA]
¡û
>W1711228868
LXWX01000117
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
13654
13579
-
Thr
CGT
[ENA]
¡û
>W1711505831
MKVW01000005
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
9734
9659
-
Thr
CGT
[ENA]
¡û
>W1711505863
MKVX01000005
Alphaproteobacteria
Rhizobiales bacterium 62-47 [MKVX]
447560
447635
+
Thr
CGT
[ENA]
¡û
>W1711783518
MVOD01000017
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
58193
58268
+
Thr
CGT
[ENA]
¡û
>C171131948
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
7587912
7587837
-
Thr
CGT
-
¡û
>W131186384
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
288252
288177
-
Thr
CGT
[ENA]
¡û
>W131163815
ARAB01000002
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
2312
2237
-
Thr
CGT
[ENA]
¡û
>C004076
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
289723
289648
-
Thr
CGT
[Ensembl]
¡û
>C004123
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
311605
311530
-
Thr
CGT
[Ensembl]
¡û
>C018878
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
70577
70502
-
Thr
CGT
[Ensembl]
¡û
>C018879
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
58307
58382
+
Thr
CGT
[Ensembl]
¡û
>C018967
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
537639
537564
-
Thr
CGT
[Ensembl]
¡û
>C018976
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
284219
284294
+
Thr
CGT
[Ensembl]
¡û
>C019068
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
354148
354073
-
Thr
CGT
[Ensembl]
¡û
>WENV180255281
OBEQ010710570
[OBEQ] groundwater metagenome; groundwater
389
314
-
Thr
CGT
[ENA]
¢þ
>WENV180308757
OBJR01172921
[OBJR] soil metagenome; soil
28
103
+
Thr
CGT
[ENA]
¢þ
>WENV180354433
OBLQ011742137
[OBLQ] soil metagenome; soil
160
85
-
Thr
CGT
[ENA]
¢þ
>WENV180690804
OCZS010026057
[OCZS] soil metagenome; soil
979
904
-
Thr
CGT
[ENA]
¢þ
>WENV180694609
OCZS012481642
[OCZS] soil metagenome; soil
151
76
-
Thr
CGT
[ENA]
¢þ
>WENV181166898
OEIU01004036
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5358
5433
+
Thr
CGT
[ENA]
¢þ
>WENV181166960
OEIU01004941
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5862
5937
+
Thr
CGT
[ENA]
¢þ
>WENV181234788
OFEU01008944
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
455
380
-
Thr
CGT
[ENA]
¢þ
>W141149768
AWZU01000033
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
30209
30284
+
Thr
CGT
[ENA]
¡û
>W08008849
ABLP01000004
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
119957
120032
+
Thr
CGT
[ENA]
¡û
>W141213971
AZSJ01000003
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
1682081
1682156
+
Thr
CGT
[ENA]
¡û
>W141216055
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
890441
890366
-
Thr
CGT
[ENA]
¡û
>W141223328
BADD01000673
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
2541
2616
+
Thr
CGT
[ENA]
¡û
>WENV182409136
OIFG01002469
[OIFG] human gut metagenome; stool
1446
1371
-
Thr
CGT
[ENA]
¢þ
>WENV182412650
OIFV01002364
[OIFV] human gut metagenome; stool
412
487
+
Thr
CGT
[ENA]
¢þ
>W141240082
CAFK01000112
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
32917
32842
-
Thr
CGT
[ENA]
¡û
>WENV182962862
OKWO01001585
[OKWO] human gut metagenome; stool
1449
1374
-
Thr
CGT
[ENA]
¢þ
>WENV182962930
OKWP01000012
[OKWP] human gut metagenome; stool
202584
202659
+
Thr
CGT
[ENA]
¢þ
>WENV182966085
OKWU01001730
[OKWU] human gut metagenome; stool
521
446
-
Thr
CGT
[ENA]
¢þ
>WENV182966367
OKWV01001834
[OKWV] human gut metagenome; stool
605
680
+
Thr
CGT
[ENA]
¢þ
>WENV182966588
OKWW01003375
[OKWW] human gut metagenome; stool
784
709
-
Thr
CGT
[ENA]
¢þ
>WENV183660357
ORJL010016464
[ORJL] groundwater metagenome; groundwater
1727
1652
-
Thr
CGT
[ENA]
¢þ
>WENV183675632
ORJL011532032
[ORJL] groundwater metagenome; groundwater
113
188
+
Thr
CGT
[ENA]
¢þ
>WENV183684916
ORMF010774510
[ORMF] groundwater metagenome; groundwater
704
779
+
Thr
CGT
[ENA]
¢þ
>WENV183736609
PJUC01022660
[PJUC] soil metagenome; Soil enriched on filter paper
151
226
+
Thr
CGT
[ENA]
¢þ
>WENV183740608
PJUF01004376
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2492
2567
+
Thr
CGT
[ENA]
¢þ
>WENV170709078
LNFM01000095
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
252019
251944
-
Thr
CGT
[ENA]
¢þ
>C181001039
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
50916
50991
+
Thr
CGT
-
¡û
>C181041842
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
283994
284069
+
Thr
CGT
-
¡û
>C181041890
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
287341
287416
+
Thr
CGT
-
¡û
>C181089627
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
2426456
2426531
+
Thr
CGT
-
¡û
>W09103842
AAKZ01000014
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
143223
143148
-
Thr
CGT
[ENA]
¡û
>W09103856
AALA01000003
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
207470
207545
+
Thr
CGT
[ENA]
¡û
>W09104109
AALJ01000002
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [AALJ]
387092
387017
-
Thr
CGT
[ENA]
¡û
>W09104383
AALQ01000004
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
227328
227253
-
Thr
CGT
[ENA]
¡û
>W09104430
AALR01000016
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
103374
103449
+
Thr
CGT
[ENA]
¡û
>W09107611
ABJR01000010
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
44974
45049
+
Thr
CGT
[ENA]
¡û
>C191005685
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
3703577
3703502
-
Thr
CGT
-
¡û
>C191221063
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
1911491
1911566
+
Thr
CGT
-
¡û
>W141701378
JMKQ01000004
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
9035
8960
-
Thr
CGT
[ENA]
¡û
>W141730473
JNIJ01000019
Alphaproteobacteria
Bradyrhizobium sp. URHD0069 [JNIJ]
64491
64566
+
Thr
CGT
[ENA]
¡û
>W141821086
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
2747971
2747896
-
Thr
CGT
[ENA]
¡û
>W141821241
JQNK01000010
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
9696
9621
-
Thr
CGT
[ENA]
¡û
>W1910501733
FYAS01000031
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
98941
99016
+
Thr
CGT
[ENA]
¡û
>C09107920
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
1682146
1682071
-
Thr
CGT
[Ensembl]
¡û
>W1911148380
NPEU01000295
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
3890
3815
-
Thr
CGT
[ENA]
¡û
>W1911148498
NPEX01000040
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
176
251
+
Thr
CGT
[ENA]
¡û
>W1911219156
NRSI01000011
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
44360
44435
+
Thr
CGT
[ENA]
¡û
>W1911760556
QWVU01000010
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
309027
308952
-
Thr
CGT
[ENA]
¡û
>W1911809182
QYYC01000040
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
44569
44644
+
Thr
CGT
[ENA]
¡û
>W1911809211
QYYD01000006
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
5603
5678
+
Thr
CGT
[ENA]
¡û
>W1810068811
PDZR01000028
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
795
720
-
Thr
CGT
[ENA]
¡û
>W1810330557
PUIV01000005
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
4873
4798
-
Thr
CGT
[ENA]
¡û
>W1810679440
QKQS01000023
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
789675
789750
+
Thr
CGT
[ENA]
¡û
>W1810787530
QRDT01000039
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
6474
6399
-
Thr
CGT
[ENA]
¡û
>W1810884427
QUMP01000039
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
6474
6399
-
Thr
CGT
[ENA]
¡û
>W10112834
ADFI01000025
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
29568
29643
+
Thr
CGT
[ENA]
¡û
>W10118841
ADVE01000054
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
6343
6268
-
Thr
CGT
[ENA]
¡û
>C10110737
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
276776
276851
+
Thr
CGT
[Ensembl]
¡û
>W11116061
ADFI01000025
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
29568
29643
+
Thr
CGT
[ENA]
¡û
>C11118780
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
413476
413401
-
Thr
CGT
[Ensembl]
¡û
>W11125013
ADVE01000054
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
6343
6268
-
Thr
CGT
[ENA]
¡û
>W1511533283
JYMR01000045
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
168494
168419
-
Thr
CGT
[ENA]
¡û
>W1511533316
JYMS01000027
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
176836
176761
-
Thr
CGT
[ENA]
¡û
>W121127089
CAFH01000183
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
5454
5529
+
Thr
CGT
[ENA]
¡û
>W121127127
CAFI01000187
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
88
13
-
Thr
CGT
[ENA]
¡û
>W121127159
CAFJ01000087
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
7325
7250
-
Thr
CGT
[ENA]
¡û
>W121067964
AJTV01000001
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
63898
63973
+
Thr
CGT
[ENA]
¡û
>W121103231
AKZI01000130
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
10935
11010
+
Thr
CGT
[ENA]
¡û
>C131000842
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
317402
317327
-
Thr
CGT
[Ensembl]
¡û
>W1610649519
LJIC01000058
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
5540
5615
+
Thr
CGT
[ENA]
¡û
>W1610941005
LUUM01000004
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
4791
4716
-
Thr
CGT
[ENA]
¡û
>WENV077771
AAFX01104366
Soil microbial communities from Minnesota Farm
239
316
+
Thr
CGT
[ENA]
>W1611012785
LXWX01000117
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
13654
13579
-
Thr
CGT
[ENA]
¡û
>W1710548432
FODT01000017
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
32847
32922
+
Thr
CGT
[ENA]
¡û
>W1710553270
FOHL01000006
Alphaproteobacteria
Oceanicella actignis xiamenense [FOHL]
125849
125774
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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