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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247575 (23 seq.)
>WENV180044135
LQAJ01006682
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
866
791
-
Ala
TGC
[ENA]
¢þ
>WENV181206804
OFAW01009164
[OFAW] metagenome; hydrothermal vent
784
708
-
Ala
TGC
[ENA]
¢þ
>WENV181207656
OFAZ01010168
[OFAZ] metagenome; hydrothermal vent
228
303
+
Ala
TGC
[ENA]
¢þ
>WENV181208068
OFBA01015598
[OFBA] metagenome; hydrothermal vent
546
471
-
Ala
TGC
[ENA]
¢þ
>WENV181224005
OFDD01007875
[OFDD] metagenome; hydrothermal vent
713
638
-
Ala
TGC
[ENA]
¢þ
>WENV183747554
PPCM01005019
[PPCM] marine sediment metagenome; marine sediment
945
1020
+
Ala
TGC
[ENA]
¢þ
>WENV170645418
JMSV01003989
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
820
745
-
Ala
TGC
[ENA]
¢þ
>WENV170645429
JMSV01004679
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
583
508
-
Ala
TGC
[ENA]
¢þ
>WENV170645450
JMSV01005222
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
582
507
-
Ala
TGC
[ENA]
¢þ
>WENV170646451
JQGR01006810
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
312
237
-
Ala
TGC
[ENA]
¢þ
>WENV170695791
LGVE01171404
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
831
906
+
Ala
TGC
[ENA]
¢þ
>WENV170698142
LGVF01269470
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
4509
4584
+
Ala
TGC
[ENA]
¢þ
>W141779031
JONL01000018
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
253
178
-
Ala
TGC
[ENA]
¡û
>C09104188
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
66792
66867
+
Ala
TGC
[Ensembl]
¡û
>C09104243
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3734107
3734032
-
Ala
TGC
[Ensembl]
¡û
>C09104246
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3376770
3376695
-
Ala
TGC
[Ensembl]
¡û
>C09104248
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2963855
2963780
-
Ala
TGC
[Ensembl]
¡û
>C09104261
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2470400
2470325
-
Ala
TGC
[Ensembl]
¡û
>C131018084
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1343007
1343082
+
Ala
TGC
[Ensembl]
¡û
>C131018086
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1643906
1643981
+
Ala
TGC
[Ensembl]
¡û
>C131018093
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2184610
2184685
+
Ala
TGC
[Ensembl]
¡û
>C131018095
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2387175
2387250
+
Ala
TGC
[Ensembl]
¡û
>C131018145
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
668279
668204
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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