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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24760 (77 seq.)
>W1710785552
LJHY01000022
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
238664
238753
+
Ser
TGA
[ENA]
¡û
>W1710867434
LMIG01000005
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
532942
533031
+
Ser
TGA
[ENA]
¡û
>W1710912525
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
397200
397111
-
Ser
TGA
[ENA]
¡û
>W1710912619
LNRT01000009
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
8499
8588
+
Ser
TGA
[ENA]
¡û
>W1711073273
LSIJ01000092
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
44779
44690
-
Ser
TGA
[ENA]
¡û
>W1711127858
LURA01000079
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
297
386
+
Ser
TGA
[ENA]
¡û
>W1711127875
LURB01000010
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
53083
53172
+
Ser
TGA
[ENA]
¡û
>W1711127912
LURC01000056
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
3123
3034
-
Ser
TGA
[ENA]
¡û
>W1711387012
MEGC01000029
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
32755
32666
-
Ser
TGA
[ENA]
¡û
>W1711387053
MEGD01000028
Alphaproteobacteria
Novosphingobium sp. SCN 66-18 [MEGD]
3719
3630
-
Ser
TGA
[ENA]
¡û
>C171094555
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
1105421
1105510
+
Ser
TGA
-
¡û
>C171128437
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
2054588
2054499
-
Ser
TGA
-
¡û
>W131160206
AQWK01000002
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
262703
262792
+
Ser
TGA
[ENA]
¡û
>C014688
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
2060462
2060551
+
Ser
TGA
[Ensembl]
¡û
>C019757
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
1306597
1306508
-
Ser
TGA
[Ensembl]
¡û
>WENV180020136
FTCV01002314
[FTCV] metagenome; soil
7810
7721
-
Ser
TGA
[ENA]
¢þ
>WENV180099470
NMRC01006994
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
281
192
-
Ser
TGA
[ENA]
¢þ
>WENV180099542
NMRC01015775
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
105
16
-
Ser
TGA
[ENA]
¢þ
>WENV180284802
OBID01119600
[OBID] metagenome; sludge
260
171
-
Ser
TGA
[ENA]
¢þ
>WENV180593963
OCOY01006970
[OCOY] marine metagenome; ENVO:00002010
121
32
-
Ser
TGA
[ENA]
¢þ
>W141077938
ATHL01000028
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
108966
108877
-
Ser
TGA
[ENA]
¡û
>WENV181167820
OEIU01081020
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
350
439
+
Ser
TGA
[ENA]
¢þ
>WENV181191288
OEPS010051320
[OEPS] soil metagenome; soil
611
700
+
Ser
TGA
[ENA]
¢þ
>WENV181226665
OFDN01000001
[OFDN] hot springs metagenome; Water
1194887
1194798
-
Ser
TGA
[ENA]
¢þ
>WENV181384983
OFRI01024428
[OFRI] wastewater metagenome; Exp Tend VB 90WW
706
617
-
Ser
TGA
[ENA]
¢þ
>WENV181402349
OFTY01000743
[OFTY] sludge metagenome; sludge
15082
15170
+
Ser
TGA
[ENA]
¢þ
>WENV181840103
OGVO01041807
[OGVO] freshwater metagenome; freshwater
199
110
-
Ser
TGA
[ENA]
¢þ
>WENV183725866
PJQF01028407
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
539
450
-
Ser
TGA
[ENA]
¢þ
>WENV183727853
PJTP01001299
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
194
105
-
Ser
TGA
[ENA]
¢þ
>WENV183727961
PJTP01010350
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
511
600
+
Ser
TGA
[ENA]
¢þ
>WENV183733204
PJTY01000259
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
3135
3046
-
Ser
TGA
[ENA]
¢þ
>WENV170010264
APMI01012003
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9697
9608
-
Ser
TGA
[ENA]
¢þ
>WENV170011159
APMI01046685
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
221
132
-
Ser
TGA
[ENA]
¢þ
>WENV170556778
CXWL01013546
[CXWL] groundwater metagenome; biofilm material
21725
21636
-
Ser
TGA
[ENA]
¢þ
>WENV170708342
LNAP01071503
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
895
984
+
Ser
TGA
[ENA]
¢þ
>WENV170709321
LNFM01000257
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
249238
249327
+
Ser
TGA
[ENA]
¢þ
>WENV170711495
LNFM01005523
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
90
1
-
Ser
TGA
[ENA]
¢þ
>WENV170713931
LNFM01047050
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3059
2970
-
Ser
TGA
[ENA]
¢þ
>WENV170734549
LULK01009505
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
2054
1965
-
Ser
TGA
[ENA]
¢þ
>WENV170735491
LULL01002692
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
1842
1753
-
Ser
TGA
[ENA]
¢þ
>WENV170745764
LULY01040083
[LULY] marine metagenome; Red Sea water column Station 91 - depth 200m
369
458
+
Ser
TGA
[ENA]
¢þ
>WENV170759521
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
974068
973979
-
Ser
TGA
[ENA]
¢þ
>WENV170761395
LUMV01000189
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
17618
17529
-
Ser
TGA
[ENA]
¢þ
>WENV170973411
MTKY01037443
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2110
2021
-
Ser
TGA
[ENA]
¢þ
>C181133089
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
1699652
1699563
-
Ser
TGA
-
¡û
>C181192066
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
1922649
1922560
-
Ser
TGA
-
¡û
>C191000591
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
1248931
1248842
-
Ser
TGA
-
¡û
>C191163798
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
2290632
2290721
+
Ser
TGA
-
¡û
>W1910231955
FPEH01000015
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
516009
516098
+
Ser
TGA
[ENA]
¡û
>W1910501786
FYAT01000017
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
193454
193543
+
Ser
TGA
[ENA]
¡û
>W1910744380
MIAM01000015
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
58831
58920
+
Ser
TGA
[ENA]
¡û
>W1810107946
PHFW01000001
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
230094
230183
+
Ser
TGA
[ENA]
¡û
>W1810121212
PHUF01000002
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
685925
685836
-
Ser
TGA
[ENA]
¡û
>W1810239625
PPSM01000036
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
116299
116388
+
Ser
TGA
[ENA]
¡û
>C151044376
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
1845647
1845736
+
Ser
TGA
[Ensembl]
¡û
>C151048351
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
779278
779367
+
Ser
TGA
[Ensembl]
¡û
>C151051505
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
2385478
2385567
+
Ser
TGA
-
¡û
>W1510019761
BBXA01000031
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
74604
74693
+
Ser
TGA
[ENA]
¡û
>W1510024412
CCBH010000222
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
23922
23833
-
Ser
TGA
[ENA]
¡û
>C161043651
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
1889556
1889645
+
Ser
TGA
[Ensembl]
¡û
>C161055613
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
3268606
3268695
+
Ser
TGA
[Ensembl]
¡û
>W121009717
AGFM01000065
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
89147
89236
+
Ser
TGA
[ENA]
¡û
>W1610071365
BCUA01000015
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
16495
16406
-
Ser
TGA
[ENA]
¡û
>W1610077031
BCZF01000006
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
8260
8349
+
Ser
TGA
[ENA]
¡û
>W1610614815
LGJH01000146
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
31520
31431
-
Ser
TGA
[ENA]
¡û
>W1610649358
LJHY01000022
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
238664
238753
+
Ser
TGA
[ENA]
¡û
>W1610729780
LMIG01000005
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
532942
533031
+
Ser
TGA
[ENA]
¡û
>W1610770884
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
397200
397111
-
Ser
TGA
[ENA]
¡û
>W1610770978
LNRT01000009
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
8499
8588
+
Ser
TGA
[ENA]
¡û
>W1610912578
LSIJ01000092
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
44779
44690
-
Ser
TGA
[ENA]
¡û
>W1610938972
LURA01000079
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
297
386
+
Ser
TGA
[ENA]
¡û
>W1610938989
LURB01000010
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
53083
53172
+
Ser
TGA
[ENA]
¡û
>W1610939026
LURC01000056
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
3123
3034
-
Ser
TGA
[ENA]
¡û
>W1710068730
BCUA01000015
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
16495
16406
-
Ser
TGA
[ENA]
¡û
>W1710074720
BCZF01000006
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
8260
8349
+
Ser
TGA
[ENA]
¡û
>W1710604562
FVZE01000001
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
818929
818840
-
Ser
TGA
[ENA]
¡û
>W1710736061
LGJH01000146
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
31520
31431
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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