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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24798 (54 seq.)
>WENV180008558
FLSB01059777
[FLSB] metagenome; saliva
76
165
+
Ser
CGA
[ENA]
¢þ
>WENV180705049
ODEJ01000663
[ODEJ] human metagenome; G_DNA_Tongue dorsum
11804
11715
-
Ser
CGA
[ENA]
¢þ
>WENV180709248
ODFJ01039562
[ODFJ] human metagenome; G_DNA_Tongue dorsum
84
173
+
Ser
CGA
[ENA]
¢þ
>WENV180719028
ODGJ01000018
[ODGJ] human metagenome; G_DNA_Tongue dorsum
85975
85886
-
Ser
CGA
[ENA]
¢þ
>WENV180749755
ODHS01000008
[ODHS] human metagenome; G_DNA_Supragingival plaque
115605
115694
+
Ser
CGA
[ENA]
¢þ
>WENV180758928
ODHY01000004
[ODHY] human metagenome; G_DNA_Buccal mucosa
80040
79951
-
Ser
CGA
[ENA]
¢þ
>WENV180769382
ODIG01062446
[ODIG] human metagenome; G_DNA_Tongue dorsum
621
532
-
Ser
CGA
[ENA]
¢þ
>WENV180776697
ODIK01098918
[ODIK] human metagenome; G_DNA_Tongue dorsum
268
357
+
Ser
CGA
[ENA]
¢þ
>WENV180784063
ODIQ01111405
[ODIQ] human metagenome; G_DNA_Tongue dorsum
222
133
-
Ser
CGA
[ENA]
¢þ
>WENV180790583
ODIT01020637
[ODIT] human metagenome; G_DNA_Tongue dorsum
880
791
-
Ser
CGA
[ENA]
¢þ
>WENV180792318
ODIW01000253
[ODIW] human metagenome; G_DNA_Tongue dorsum
8842
8753
-
Ser
CGA
[ENA]
¢þ
>WENV180794238
ODIZ01000011
[ODIZ] human metagenome; G_DNA_Tongue dorsum
80310
80221
-
Ser
CGA
[ENA]
¢þ
>WENV180800393
ODJD01000003
[ODJD] human metagenome; G_DNA_Supragingival plaque
78874
78785
-
Ser
CGA
[ENA]
¢þ
>WENV180808342
ODJK01000002
[ODJK] human metagenome; G_DNA_Subgingival plaque
11296
11207
-
Ser
CGA
[ENA]
¢þ
>WENV180816160
ODJP01005204
[ODJP] human metagenome; G_DNA_Tongue dorsum
806
717
-
Ser
CGA
[ENA]
¢þ
>WENV180831457
ODKB01210260
[ODKB] human metagenome; G_DNA_Tongue dorsum
151
62
-
Ser
CGA
[ENA]
¢þ
>WENV180852724
ODKW01004435
[ODKW] human metagenome; G_DNA_Tongue dorsum
2951
2862
-
Ser
CGA
[ENA]
¢þ
>WENV180857102
ODLA01003114
[ODLA] human metagenome; G_DNA_Buccal mucosa
434
523
+
Ser
CGA
[ENA]
¢þ
>WENV180864633
ODLH01086954
[ODLH] human metagenome; G_DNA_Tongue dorsum
268
179
-
Ser
CGA
[ENA]
¢þ
>WENV180883869
ODMC01019454
[ODMC] human metagenome; G_DNA_Tongue dorsum
1782
1693
-
Ser
CGA
[ENA]
¢þ
>WENV180896011
ODNI01000024
[ODNI] human metagenome; G_DNA_Tongue dorsum
79799
79710
-
Ser
CGA
[ENA]
¢þ
>WENV180900992
ODOJ01022628
[ODOJ] human metagenome; G_DNA_Tongue dorsum
267
356
+
Ser
CGA
[ENA]
¢þ
>WENV180901811
ODOK01004239
[ODOK] human metagenome; G_DNA_Tongue dorsum
2467
2378
-
Ser
CGA
[ENA]
¢þ
>WENV180917286
ODTD01011007
[ODTD] human metagenome; G_DNA_Tongue dorsum
765
676
-
Ser
CGA
[ENA]
¢þ
>WENV180929804
ODTN01014954
[ODTN] human metagenome; G_DNA_Tongue dorsum
412
501
+
Ser
CGA
[ENA]
¢þ
>WENV180948616
ODUG01002383
[ODUG] human metagenome; G_DNA_Tongue dorsum
127
38
-
Ser
CGA
[ENA]
¢þ
>WENV180948633
ODUG01002556
[ODUG] human metagenome; G_DNA_Tongue dorsum
7617
7528
-
Ser
CGA
[ENA]
¢þ
>WENV180949210
ODUG01010320
[ODUG] human metagenome; G_DNA_Tongue dorsum
295
206
-
Ser
CGA
[ENA]
¢þ
>WENV180954346
ODUJ01001859
[ODUJ] human metagenome; G_DNA_Tongue dorsum
3218
3307
+
Ser
CGA
[ENA]
¢þ
>WENV180954662
ODUJ01005871
[ODUJ] human metagenome; G_DNA_Tongue dorsum
813
724
-
Ser
CGA
[ENA]
¢þ
>WENV180960391
ODUM01027652
[ODUM] human metagenome; G_DNA_Tongue dorsum
690
779
+
Ser
CGA
[ENA]
¢þ
>WENV180978026
ODUZ01014711
[ODUZ] human metagenome; G_DNA_Tongue dorsum
963
1052
+
Ser
CGA
[ENA]
¢þ
>WENV180988547
ODVL01003025
[ODVL] human metagenome; G_DNA_Tongue dorsum
2201
2290
+
Ser
CGA
[ENA]
¢þ
>WENV181006227
ODWA01004656
[ODWA] human metagenome; G_DNA_Buccal mucosa
2681
2592
-
Ser
CGA
[ENA]
¢þ
>WENV181011051
ODWI01004063
[ODWI] human metagenome; G_DNA_Tongue dorsum
2851
2940
+
Ser
CGA
[ENA]
¢þ
>WENV181019057
ODWU01000475
[ODWU] human metagenome; G_DNA_Supragingival plaque
1454
1543
+
Ser
CGA
[ENA]
¢þ
>WENV181033852
ODXN01032851
[ODXN] human metagenome; G_DNA_Tongue dorsum
644
555
-
Ser
CGA
[ENA]
¢þ
>WENV181037752
ODXQ01000006
[ODXQ] human metagenome; G_DNA_Tongue dorsum
5583
5494
-
Ser
CGA
[ENA]
¢þ
>WENV181065989
ODYV01018746
[ODYV] human metagenome; G_DNA_Buccal mucosa
216
305
+
Ser
CGA
[ENA]
¢þ
>WENV181085026
OEAX01001009
[OEAX] human metagenome; G_DNA_Tongue dorsum
2513
2424
-
Ser
CGA
[ENA]
¢þ
>WENV181095520
OEBY01011227
[OEBY] human metagenome; G_DNA_Tongue dorsum
651
740
+
Ser
CGA
[ENA]
¢þ
>WENV181101678
OECT01000138
[OECT] human metagenome; G_DNA_Tongue dorsum
42997
42908
-
Ser
CGA
[ENA]
¢þ
>WENV181105107
OEED01001052
[OEED] human metagenome; G_DNA_Tongue dorsum
2556
2467
-
Ser
CGA
[ENA]
¢þ
>WENV181112017
OEEL01000084
[OEEL] human metagenome; G_DNA_Tongue dorsum
11729
11818
+
Ser
CGA
[ENA]
¢þ
>WENV181114837
OEEO01007130
[OEEO] human metagenome; G_DNA_Supragingival plaque
2571
2482
-
Ser
CGA
[ENA]
¢þ
>WENV181129328
OEFX01015484
[OEFX] human metagenome; G_DNA_Tongue dorsum
947
1036
+
Ser
CGA
[ENA]
¢þ
>WENV181371928
OFQW01003170
[OFQW] wastewater metagenome; Exp Tend NO 90WW
1134
1045
-
Ser
CGA
[ENA]
¢þ
>WENV181372623
OFQX01001099
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
1137
1226
+
Ser
CGA
[ENA]
¢þ
>WENV181375783
OFQZ01003011
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
3562
3473
-
Ser
CGA
[ENA]
¢þ
>WENV181380669
OFRE01002354
[OFRE] wastewater metagenome; Exp Tend NO 50WW
3014
2925
-
Ser
CGA
[ENA]
¢þ
>WENV181389547
OFRO01000412
[OFRO] wastewater metagenome; Exp Tend NO 10WW
15412
15323
-
Ser
CGA
[ENA]
¢þ
>WENV170009945
APMI01005609
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
10714
10803
+
Ser
CGA
[ENA]
¢þ
>WENV170010738
APMI01026845
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
199
110
-
Ser
CGA
[ENA]
¢þ
>C131016142
CP005957
Unclassified
Candidatus Saccharimonas aalborgensis [CP005957]
550607
550518
-
Ser
CGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK