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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.248280 (128 seq.)
>W1710783839
LJFZ01000056
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
13105
13180
+
Pro
TGG
[ENA]
¡û
>W1710787573
LJJX01000022
Actinomycetota
Frankia sp. CpI1-P [LJJX]
110658
110733
+
Pro
TGG
[ENA]
¡û
>W1710793209
LJPA01000008
Actinomycetota
Frankia sp. ACN1ag [LJPA]
41374
41299
-
Pro
TGG
[ENA]
¡û
>W1711053930
LRTJ01000154
Actinomycetota
Frankia casuarinae BR [LRTJ]
2886
2811
-
Pro
TGG
[ENA]
¡û
>W1711053936
LRTK01000005
Actinomycetota
Frankia sp. EI5c [LRTK]
399920
399845
-
Pro
TGG
[ENA]
¡û
>W131158397
AQUA01000003
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
94387
94312
-
Pro
TGG
[ENA]
¡û
>W131158434
AQUB01000012
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
2765
2690
-
Pro
TGG
[ENA]
¡û
>W131162582
AQYZ01000023
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
607
682
+
Pro
TGG
[ENA]
¡û
>W131162949
AQZI01000004
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
45409
45484
+
Pro
TGG
[ENA]
¡û
>W1711328906
MBLN01000061
Actinomycetota
Pseudofrankia sp. EUN1h EUN1h [MBLN]
2820
2893
+
Pro
TGG
[ENA]
¡û
>W1711328944
MBLO01000072
Actinomycetota
Pseudofrankia sp. BMG5.36 BMG5.36 [MBLO]
1851
1926
+
Pro
TGG
[ENA]
¡û
>W1711603555
MOMD01000009
Actinomycetota
Frankia sp. CcI156 [MOMD]
226
301
+
Pro
TGG
[ENA]
¡û
>W1711612428
MOWP01000008
Actinomycetota
Frankia sp. CcI49 [MOWP]
80572
80647
+
Pro
TGG
[ENA]
¡û
>W1711678681
MRUJ01000053
Actinomycetota
Frankia sp. KB5 [MRUJ]
2345
2270
-
Pro
TGG
[ENA]
¡û
>W131163697
AQZX01000031
Actinomycetota
Sporichthya polymorpha DSM 43042 [AQZX]
2739814
2739739
-
Pro
TGG
[ENA]
¡û
>C000342
CP000481
Actinomycetota
Acidothermus cellulolyticus 11B 11B; ATCC 43068 [CP000481]
1796952
1796877
-
Pro
TGG
[Ensembl]
¡û
>C009353
CT573213
Actinomycetota
Frankia alni ACN14a [CT573213]
2068260
2068335
+
Pro
TGG
[Ensembl]
¡û
>C009550
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
1436741
1436816
+
Pro
TGG
[Ensembl]
¡û
>WENV016698
AACY020468453
Marine microbial communities from Global Ocean Sampling (GOS)
1373
1296
-
Pro
TGG
[ENA]
>WENV180110508
OAPN01000291
[OAPN] marine metagenome; 2011
275
350
+
Pro
TGG
[ENA]
¢þ
>WENV180113751
OAPR01017762
[OAPR] marine metagenome; seawater
377
302
-
Pro
TGG
[ENA]
¢þ
>WENV016824
AACY020470446
Marine microbial communities from Global Ocean Sampling (GOS)
2955
2878
-
Pro
TGG
[ENA]
>WENV180357448
OBNN01011023
[OBNN] marine metagenome; Coastal water
710
785
+
Pro
TGG
[ENA]
¢þ
>WENV180377168
OBON01001937
[OBON] marine metagenome; sea water
1237
1312
+
Pro
TGG
[ENA]
¢þ
>WENV180591646
OCOV01065709
[OCOV] marine metagenome; ENVO:01000301
140
65
-
Pro
TGG
[ENA]
¢þ
>WENV181298358
OFHL01085689
[OFHL] soil metagenome; Clay
240
166
-
Pro
TGG
[ENA]
¢þ
>WENV181308050
OFIS01000158
[OFIS] sludge metagenome; sludge
50261
50336
+
Pro
TGG
[ENA]
¢þ
>WENV181368350
OFQL01001023
[OFQL] freshwater metagenome; Freshwater Lake
2128
2203
+
Pro
TGG
[ENA]
¢þ
>WENV181368779
OFQN01000429
[OFQN] freshwater metagenome; Freshwater Lake
2868
2943
+
Pro
TGG
[ENA]
¢þ
>WENV181369538
OFQP01006924
[OFQP] freshwater metagenome; Freshwater Lake
113
188
+
Pro
TGG
[ENA]
¢þ
>WENV181369971
OFQR01004092
[OFQR] freshwater metagenome; Freshwater Lake
418
343
-
Pro
TGG
[ENA]
¢þ
>WENV181370207
OFQS01000548
[OFQS] freshwater metagenome; Freshwater Lake
3350
3275
-
Pro
TGG
[ENA]
¢þ
>WENV181370817
OFQT01013985
[OFQT] freshwater metagenome; Freshwater Lake
571
498
-
Pro
TGG
[ENA]
¢þ
>WENV181377114
OFRA01002631
[OFRA] wastewater metagenome; Lake Maggiore Verbania
635
710
+
Pro
TGG
[ENA]
¢þ
>WENV181379378
OFRD01000920
[OFRD] wastewater metagenome; Exp Tend CN 100WW
327
402
+
Pro
TGG
[ENA]
¢þ
>WENV181384776
OFRI01009466
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1661
1586
-
Pro
TGG
[ENA]
¢þ
>WENV181386414
OFRL01003540
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
3213
3138
-
Pro
TGG
[ENA]
¢þ
>WENV181389764
OFRO01003562
[OFRO] wastewater metagenome; Exp Tend NO 10WW
2788
2715
-
Pro
TGG
[ENA]
¢þ
>WENV181395754
OFSB01001657
[OFSB] freshwater metagenome; Freshwater Lake
655
580
-
Pro
TGG
[ENA]
¢þ
>WENV181399367
OFSE01026157
[OFSE] wastewater metagenome; Exp Tend VB 50WW
520
445
-
Pro
TGG
[ENA]
¢þ
>WENV181400238
OFSF01002913
[OFSF] wastewater metagenome; Exp Tend VB 100WW
4514
4439
-
Pro
TGG
[ENA]
¢þ
>WENV181400611
OFSF01013275
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1587
1512
-
Pro
TGG
[ENA]
¢þ
>WENV181401627
OFTX01001692
[OFTX] sludge metagenome; sludge
3133
3058
-
Pro
TGG
[ENA]
¢þ
>WENV181836562
OGVJ01012524
[OGVJ] freshwater metagenome; freshwater
678
603
-
Pro
TGG
[ENA]
¢þ
>WENV181839049
OGVN01059077
[OGVN] freshwater metagenome; freshwater
245
170
-
Pro
TGG
[ENA]
¢þ
>WENV181850980
OGWE01004331
[OGWE] freshwater metagenome; freshwater
306
381
+
Pro
TGG
[ENA]
¢þ
>WENV181852440
OGWF01023747
[OGWF] freshwater metagenome; freshwater
16
91
+
Pro
TGG
[ENA]
¢þ
>WENV181853275
OGWI01001379
[OGWI] freshwater metagenome; freshwater
2927
2852
-
Pro
TGG
[ENA]
¢þ
>WENV181855637
OGWM01000185
[OGWM] freshwater metagenome; freshwater
319
394
+
Pro
TGG
[ENA]
¢þ
>W141195317
AYTZ01000109
Actinomycetota
Frankia sp. CcI6 [AYTZ]
3061
2986
-
Pro
TGG
[ENA]
¡û
>W141202920
AZHS01000001
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
42165
42090
-
Pro
TGG
[ENA]
¡û
>WENV183092695
OLLJ01000049
[OLLJ] soil metagenome; soil
83
10
-
Pro
TGG
[ENA]
¢þ
>WENV183093271
OLLX01000064
[OLLX] soil metagenome; soil
20654
20579
-
Pro
TGG
[ENA]
¢þ
>WENV183748489
PPFU01044915
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2334
2259
-
Pro
TGG
[ENA]
¢þ
>W141427380
JENI01000118
Actinomycetota
Frankia casuarinae Thr [JENI]
3071
3146
+
Pro
TGG
[ENA]
¡û
>WENV170571995
FLOH01000439
[FLOH] marine metagenome; water
63673
63748
+
Pro
TGG
[ENA]
¢þ
>WENV170602033
FUWD010211107
[FUWD] metagenome; unknown
164
239
+
Pro
TGG
[ENA]
¢þ
>WENV170604121
FUWD010367241
[FUWD] metagenome; unknown
294
369
+
Pro
TGG
[ENA]
¢þ
>WENV170609367
FUWD011384411
[FUWD] metagenome; unknown
436
363
-
Pro
TGG
[ENA]
¢þ
>WENV170618313
FUWD012962155
[FUWD] metagenome; unknown
530
605
+
Pro
TGG
[ENA]
¢þ
>WENV170619230
FUWD013005765
[FUWD] metagenome; unknown
172
97
-
Pro
TGG
[ENA]
¢þ
>WENV170620920
FUWD013043246
[FUWD] metagenome; unknown
177
252
+
Pro
TGG
[ENA]
¢þ
>WENV170621307
FUWD013054849
[FUWD] metagenome; unknown
1441
1366
-
Pro
TGG
[ENA]
¢þ
>WENV170621449
FUWD013059656
[FUWD] metagenome; unknown
939
1014
+
Pro
TGG
[ENA]
¢þ
>WENV170626019
FUWD013212014
[FUWD] metagenome; unknown
152
227
+
Pro
TGG
[ENA]
¢þ
>WENV170629077
FUWD013260233
[FUWD] metagenome; unknown
177
252
+
Pro
TGG
[ENA]
¢þ
>WENV170629484
FUWD013271286
[FUWD] metagenome; unknown
1441
1366
-
Pro
TGG
[ENA]
¢þ
>WENV170629632
FUWD013275912
[FUWD] metagenome; unknown
939
1014
+
Pro
TGG
[ENA]
¢þ
>WENV170634243
FUWD013413338
[FUWD] metagenome; unknown
152
227
+
Pro
TGG
[ENA]
¢þ
>WENV170645492
JNSK01000011
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
60982
60907
-
Pro
TGG
[ENA]
¢þ
>WENV170645532
JNSK01000074
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
20
95
+
Pro
TGG
[ENA]
¢þ
>WENV170645570
JNSK01000189
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8027
8102
+
Pro
TGG
[ENA]
¢þ
>C181018655
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
610429
610504
+
Pro
TGG
-
¡û
>C181018727
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
739426
739501
+
Pro
TGG
-
¡û
>C181020865
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
990876
990801
-
Pro
TGG
-
¡û
>C181020904
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
945420
945345
-
Pro
TGG
-
¡û
>C181020978
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
952292
952217
-
Pro
TGG
-
¡û
>C181021014
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
945832
945757
-
Pro
TGG
-
¡û
>C181021113
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
1003694
1003619
-
Pro
TGG
-
¡û
>C181021162
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
931662
931587
-
Pro
TGG
-
¡û
>C181021274
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
948492
948417
-
Pro
TGG
-
¡û
>C181021326
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
389316
389391
+
Pro
TGG
-
¡û
>C181021387
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
963613
963538
-
Pro
TGG
-
¡û
>W09102685
AAIE01000002
Actinomycetota
Frankia casuarinae CcI3 [AAIE]
286362
286287
-
Pro
TGG
[ENA]
¡û
>W141750855
JNSF01000009
Actinomycetota
actinobacterium acAMD-5 [JNSF]
13983
14058
+
Pro
TGG
[ENA]
¡û
>W141803587
JPGU01000010
Actinomycetota
Frankia sp. CeD [JPGU]
128988
128913
-
Pro
TGG
[ENA]
¡û
>W141804386
JPHT01000004
Actinomycetota
Frankia sp. Allo2 [JPHT]
97569
97644
+
Pro
TGG
[ENA]
¡û
>W1910546343
FZMO01000290
Actinomycetota
Frankia canadensis ARgP5 [FZMO]
8836
8762
-
Pro
TGG
[ENA]
¡û
>W1911504308
OESX01000290
Actinomycetota
Frankia canadensis ARgP5 [OESX]
8836
8762
-
Pro
TGG
[ENA]
¡û
>WENV031833
AACY021398068
Marine microbial communities from Global Ocean Sampling (GOS)
631
554
-
Pro
TGG
[ENA]
>W10111555
ADDL01000058
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
43845
43918
+
Pro
TGG
[ENA]
¡û
>W10114042
ADGT01000011
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
39536
39461
-
Pro
TGG
[ENA]
¡û
>W10114187
ADGX01000085
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
21051
21126
+
Pro
TGG
[ENA]
¡û
>WENV037220
AACY021841530
Marine microbial communities from Global Ocean Sampling (GOS)
137
60
-
Pro
TGG
[ENA]
>C11109200
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
2381293
2381366
+
Pro
TGG
[Ensembl]
¡û
>C11109362
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
1783939
1784014
+
Pro
TGG
[Ensembl]
¡û
>W11114482
ADDL01000058
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
43845
43918
+
Pro
TGG
[ENA]
¡û
>W11117378
ADGT01000011
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
39536
39461
-
Pro
TGG
[ENA]
¡û
>W11117523
ADGX01000085
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
21051
21126
+
Pro
TGG
[ENA]
¡û
>W1511479822
JWIO01000014
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
144589
144514
-
Pro
TGG
[ENA]
¡û
>W1511524709
JYFN01000001
Actinomycetota
Frankia torreyi CpI1-S [JYFN]
109526
109601
+
Pro
TGG
[ENA]
¡û
>WENV045053
AACY022479014
Marine microbial communities from Global Ocean Sampling (GOS)
112
35
-
Pro
TGG
[ENA]
>W1511573832
LANG01000011
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
438186
438259
+
Pro
TGG
[ENA]
¡û
>WENV045470
AACY022519754
Marine microbial communities from Global Ocean Sampling (GOS)
549
472
-
Pro
TGG
[ENA]
>WENV057277
AACY023289985
Marine microbial communities from Global Ocean Sampling (GOS)
1026
949
-
Pro
TGG
[ENA]
>WENV057312
AACY023291195
Marine microbial communities from Global Ocean Sampling (GOS)
989
912
-
Pro
TGG
[ENA]
>WENV057518
AACY023297355
Marine microbial communities from Global Ocean Sampling (GOS)
658
581
-
Pro
TGG
[ENA]
>WENV057987
AACY023313841
Marine microbial communities from Global Ocean Sampling (GOS)
273
196
-
Pro
TGG
[ENA]
>WENV058143
AACY023319029
Marine microbial communities from Global Ocean Sampling (GOS)
220
143
-
Pro
TGG
[ENA]
>WENV058775
AACY023341029
Marine microbial communities from Global Ocean Sampling (GOS)
1093
1170
+
Pro
TGG
[ENA]
>WENV058808
AACY023342459
Marine microbial communities from Global Ocean Sampling (GOS)
1242
1319
+
Pro
TGG
[ENA]
>WENV058812
AACY023342666
Marine microbial communities from Global Ocean Sampling (GOS)
856
779
-
Pro
TGG
[ENA]
>WENV058906
AACY023346515
Marine microbial communities from Global Ocean Sampling (GOS)
766
843
+
Pro
TGG
[ENA]
>W121069959
AJWA01000053
Actinomycetota
Frankia sp. QA3 [AJWA]
154326
154251
-
Pro
TGG
[ENA]
¡û
>W1610163561
FAOZ01000001
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
513396
513321
-
Pro
TGG
[ENA]
¡û
>W1610507943
FLUV01000933
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
120
195
+
Pro
TGG
[ENA]
¡û
>W1610597116
LFCW01000003
Actinomycetota
Frankia sp. R43 [LFCW]
440550
440625
+
Pro
TGG
[ENA]
¡û
>W1610625358
LIAM01000058
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
5810
5735
-
Pro
TGG
[ENA]
¡û
>W1610625373
LIAN01000066
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
3627
3552
-
Pro
TGG
[ENA]
¡û
>W1610648347
LJFZ01000056
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
13105
13180
+
Pro
TGG
[ENA]
¡û
>W1610651428
LJJX01000022
Actinomycetota
Frankia sp. CpI1-P [LJJX]
110658
110733
+
Pro
TGG
[ENA]
¡û
>W1610657213
LJPA01000008
Actinomycetota
Frankia sp. ACN1ag [LJPA]
41374
41299
-
Pro
TGG
[ENA]
¡û
>W1610895118
LRTJ01000154
Actinomycetota
Frankia casuarinae BR [LRTJ]
2886
2811
-
Pro
TGG
[ENA]
¡û
>W1610895124
LRTK01000005
Actinomycetota
Frankia sp. EI5c [LRTK]
399920
399845
-
Pro
TGG
[ENA]
¡û
>W1710165228
FAOZ01000001
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
513396
513321
-
Pro
TGG
[ENA]
¡û
>W1710718275
LFCW01000003
Actinomycetota
Frankia sp. R43 [LFCW]
440550
440625
+
Pro
TGG
[ENA]
¡û
>W1710756485
LIAM01000058
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
5810
5735
-
Pro
TGG
[ENA]
¡û
>W1710756500
LIAN01000066
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
3627
3552
-
Pro
TGG
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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