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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.248507 (77 seq.)
>PL171000648
CP007453
Firmicutes
Peptoclostridium acidaminophilum DSM 3953 plasmid:EAL2_808p
342525
342600
+
Met
CAT
[ENA]
¡û
>C171131183
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
315012
314937
-
Met
CAT
-
¡û
>WENV180326005
OBKS01020440
[OBKS] human gut metagenome; human gut
485
410
-
fMet
CAT
[ENA]
¢þ
>WENV180455585
OBXO01012113
[OBXO] human gut metagenome; faeces
961
886
-
fMet
CAT
[ENA]
¢þ
>WENV180456668
OBXR01001624
[OBXR] human gut metagenome; faeces
105
30
-
fMet
CAT
[ENA]
¢þ
>WENV180605663
OCPT01000559
[OCPT] human gut metagenome; human gut
20005
19930
-
fMet
CAT
[ENA]
¢þ
>WENV180748496
ODHN01233373
[ODHN] human metagenome; G_DNA_Stool
175
100
-
fMet
CAT
[ENA]
¢þ
>WENV180855190
ODKX01044984
[ODKX] human metagenome; G_DNA_Tongue dorsum
552
626
+
fMet
CAT
[ENA]
¢þ
>WENV180858635
ODLC01017839
[ODLC] human metagenome; G_DNA_Tongue dorsum
53
128
+
fMet
CAT
[ENA]
¢þ
>WENV180886244
ODME01036471
[ODME] human metagenome; G_DNA_Stool
113
40
-
fMet
CAT
[ENA]
¢þ
>WENV180902666
ODOK01124469
[ODOK] human metagenome; G_DNA_Tongue dorsum
25
100
+
fMet
CAT
[ENA]
¢þ
>WENV180949680
ODUG01029006
[ODUG] human metagenome; G_DNA_Tongue dorsum
531
606
+
fMet
CAT
[ENA]
¢þ
>WENV180985711
ODVJ01013011
[ODVJ] human metagenome; G_DNA_Tongue dorsum
512
587
+
fMet
CAT
[ENA]
¢þ
>WENV181038981
ODXQ01007767
[ODXQ] human metagenome; G_DNA_Tongue dorsum
186
261
+
fMet
CAT
[ENA]
¢þ
>WENV181058202
ODYL01005022
[ODYL] human metagenome; G_DNA_Tongue dorsum
4808
4883
+
fMet
CAT
[ENA]
¢þ
>WENV181138502
OEGN01000087
[OEGN] human metagenome; G_DNA_Tongue dorsum
77778
77703
-
fMet
CAT
[ENA]
¢þ
>WENV181486909
OGFN01044888
[OGFN] metagenome; Human gut stool
646
571
-
fMet
CAT
[ENA]
¢þ
>WENV181551519
OGIN01032941
[OGIN] metagenome; Human gut stool
191
266
+
fMet
CAT
[ENA]
¢þ
>WENV181556386
OGIU01019994
[OGIU] metagenome; Human gut stool
908
833
-
fMet
CAT
[ENA]
¢þ
>WENV181558448
OGIX01000853
[OGIX] metagenome; Human gut stool
1850
1925
+
fMet
CAT
[ENA]
¢þ
>WENV181626575
OGML01056536
[OGML] metagenome; Human gut stool
489
564
+
fMet
CAT
[ENA]
¢þ
>WENV181663405
OGOH01018225
[OGOH] human gut metagenome; faeces
206
279
+
fMet
CAT
[ENA]
¢þ
>W141168186
AXUS01000007
Bacillota
Clostridioides mangenotii TR [AXUS]
110846
110771
-
Met
CAT
[ENA]
¡û
>W141168231
AXUS01000043
Bacillota
Clostridioides mangenotii TR [AXUS]
1529
1604
+
Met
CAT
[ENA]
¡û
>W141168240
AXUS01000053
Bacillota
Clostridioides mangenotii TR [AXUS]
3451
3526
+
Met
CAT
[ENA]
¡û
>W141168259
AXUS01000062
Bacillota
Clostridioides mangenotii TR [AXUS]
1916
1841
-
Met
CAT
[ENA]
¡û
>W141168290
AXUS01000073
Bacillota
Clostridioides mangenotii TR [AXUS]
790
715
-
Met
CAT
[ENA]
¡û
>WENV181747397
OGQN01027744
[OGQN] human gut metagenome; faeces
880
955
+
fMet
CAT
[ENA]
¢þ
>WENV181788705
OGRO01002921
[OGRO] human gut metagenome; faeces
11204
11131
-
fMet
CAT
[ENA]
¢þ
>WENV181789577
OGRO01024784
[OGRO] human gut metagenome; faeces
1087
1012
-
fMet
CAT
[ENA]
¢þ
>WENV181793541
OGRR01004634
[OGRR] human gut metagenome; faeces
91
16
-
fMet
CAT
[ENA]
¢þ
>WENV181802495
OGSD01000525
[OGSD] human gut metagenome; faeces
39964
39891
-
fMet
CAT
[ENA]
¢þ
>WENV181863562
OGWT01004724
[OGWT] human gut metagenome; faeces
7427
7500
+
fMet
CAT
[ENA]
¢þ
>WENV181876134
OGXC01002141
[OGXC] human gut metagenome; faeces
4210
4135
-
fMet
CAT
[ENA]
¢þ
>WENV181876232
OGXC01003585
[OGXC] human gut metagenome; faeces
3268
3343
+
fMet
CAT
[ENA]
¢þ
>WENV182126992
OHJU01002598
[OHJU] human gut metagenome; feces
486
561
+
fMet
CAT
[ENA]
¢þ
>WENV182220004
OHQR01026178
[OHQR] human gut metagenome; feces
460
385
-
fMet
CAT
[ENA]
¢þ
>W141259095
CBYM010000009
Bacillota
Clostridium saudiense JCC [CBYM]
102536
102461
-
Met
CAT
[ENA]
¡û
>W141259110
CBYM010000018
Bacillota
Clostridium saudiense JCC [CBYM]
63167
63242
+
Met
CAT
[ENA]
¡û
>W141259111
CBYM010000018
Bacillota
Clostridium saudiense JCC [CBYM]
58081
58006
-
Met
CAT
[ENA]
¡û
>WENV182637525
OJLA01002152
[OJLA] metagenome; faeces
7012
6937
-
fMet
CAT
[ENA]
¢þ
>WENV182663292
OJMO01005923
[OJMO] human gut metagenome; feces
114
39
-
fMet
CAT
[ENA]
¢þ
>W141267580
CCNP01000018
Bacillota
Clostridium jeddahitimonense CL-2 [CCNP]
425459
425384
-
Met
CAT
[ENA]
¡û
>WENV182796665
OJSQ01051242
[OJSQ] human gut metagenome; human gut
376
451
+
fMet
CAT
[ENA]
¢þ
>WENV182816054
OJYV01003177
[OJYV] human gut metagenome; human gut
115
190
+
fMet
CAT
[ENA]
¢þ
>WENV183079763
OLIX01069179
[OLIX] human gut metagenome; feces
595
670
+
fMet
CAT
[ENA]
¢þ
>WENV183098046
OLNE01030436
[OLNE] human gut metagenome; faeces
569
494
-
fMet
CAT
[ENA]
¢þ
>WENV183103562
OLNJ01001240
[OLNJ] human gut metagenome; faeces
13028
13103
+
fMet
CAT
[ENA]
¢þ
>WENV183103575
OLNJ01001362
[OLNJ] human gut metagenome; faeces
4111
4036
-
fMet
CAT
[ENA]
¢þ
>WENV183126925
OLNY01060704
[OLNY] human gut metagenome; faeces
169
94
-
fMet
CAT
[ENA]
¢þ
>WENV183196823
OLPU01004720
[OLPU] human gut metagenome; faeces
13
88
+
fMet
CAT
[ENA]
¢þ
>WENV183234006
OLQV01008935
[OLQV] human gut metagenome; faeces
2469
2544
+
fMet
CAT
[ENA]
¢þ
>WENV183237971
OLQY01002661
[OLQY] human gut metagenome; faeces
7739
7814
+
fMet
CAT
[ENA]
¢þ
>WENV183241959
OLRB01001800
[OLRB] human gut metagenome; faeces
3366
3291
-
fMet
CAT
[ENA]
¢þ
>WENV183242148
OLRB01005673
[OLRB] human gut metagenome; faeces
1844
1769
-
fMet
CAT
[ENA]
¢þ
>WENV183443900
OMCN01013654
[OMCN] human gut metagenome; feces
231
306
+
fMet
CAT
[ENA]
¢þ
>WENV183470233
OMEJ01006948
[OMEJ] human gut metagenome; feces
978
1053
+
fMet
CAT
[ENA]
¢þ
>C181031979
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2776876
2776951
+
Met
CAT
-
¡û
>C191051299
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
315012
314937
-
Met
CAT
-
¡û
>C191123839
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
871698
871623
-
Met
CAT
-
¡û
>W141563455
JIAA01000001
Bacillota
Clostridioides mangenotii LM2 [JIAA]
2841620
2841545
-
Met
CAT
[ENA]
¡û
>W141563456
JIAA01000001
Bacillota
Clostridioides mangenotii LM2 [JIAA]
2841502
2841427
-
Met
CAT
[ENA]
¡û
>W141563469
JIAA01000001
Bacillota
Clostridioides mangenotii LM2 [JIAA]
39067
38992
-
Met
CAT
[ENA]
¡û
>W141563488
JIAA01000001
Bacillota
Clostridioides mangenotii LM2 [JIAA]
37354
37279
-
Met
CAT
[ENA]
¡û
>W141703271
JMMB01000007
Bacillota
Peptostreptococcaceae bacterium VA2 [JMMB]
1588274
1588349
+
Met
CAT
[ENA]
¡û
>W09133485
ACPD01000021
Bacillota
Clostridium cellulovorans 743B [ACPD]
195
120
-
Met
CAT
[ENA]
¡û
>C10102797
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
4572517
4572442
-
Met
CAT
[Ensembl]
¡û
>C10102800
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
4572242
4572167
-
Met
CAT
[Ensembl]
¡û
>W11184348
BABR01000472
Bacillota
Clostridium cellulovorans 743B [BABR]
166
91
-
Met
CAT
[ENA]
¡û
>W1610099876
CYYT01000002
Bacillota
Clostridium disporicum [CYYT]
19115
19190
+
Met
CAT
[ENA]
¡û
>W1610099877
CYYT01000002
Bacillota
Clostridium disporicum [CYYT]
6432
6357
-
Met
CAT
[ENA]
¡û
>W1610101802
CYZX01000024
Bacillota
Clostridium disporicum [CYZX]
48079
48004
-
Met
CAT
[ENA]
¡û
>W1610507760
FLTT01000035
Bacillota
Clostridium septicum [FLTT]
25246
25171
-
Met
CAT
[ENA]
¡û
>W1710102631
CYYT01000002
Bacillota
Clostridium disporicum [CYYT]
19115
19190
+
Met
CAT
[ENA]
¡û
>W1710102632
CYYT01000002
Bacillota
Clostridium disporicum [CYYT]
6432
6357
-
Met
CAT
[ENA]
¡û
>W1710104557
CYZX01000024
Bacillota
Clostridium disporicum [CYZX]
48079
48004
-
Met
CAT
[ENA]
¡û
>W1710499978
FLTT01000035
Bacillota
Clostridium septicum [FLTT]
25246
25171
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK