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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.248600 (139 seq.)
>W1710883037
LMVH01000002
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum [LMVH]
167980
167905
-
His
GTG
[ENA]
¡û
>W1711066749
LSDD01000177
Fusobacteriota
Leptotrichia wadei [LSDD]
3388
3463
+
His
GTG
[ENA]
¡û
>W1711095492
LTGW01000094
Fusobacteriota
Fusobacterium sp. HMSC064B12 [LTGW]
2391
2316
-
His
GTG
[ENA]
¡û
>W1711096466
LTHT01000236
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
122
47
-
His
GTG
[ENA]
¡û
>W1711525277
MLQO01000029
Fusobacteriota
Fusobacterium nucleatum [MLQO]
11281
11356
+
His
GTG
[ENA]
¡û
>W131100389
AOUL01000357
Fusobacteriota
Fusobacterium nucleatum CC53 [AOUL]
8215
8140
-
His
GTG
[ENA]
¡û
>W131167269
ARDD01000003
Fusobacteriota
Leptotrichia shahii DSM 19757 [ARDD]
144480
144555
+
His
GTG
[ENA]
¡û
>W131167986
ARDS01000005
Fusobacteriota
Leptotrichia wadei DSM 19758 [ARDS]
106681
106756
+
His
GTG
[ENA]
¡û
>WENV180003927
FLRP01038861
[FLRP] metagenome; saliva
67
142
+
His
GTG
[ENA]
¢þ
>w002470
AABF01000001
Fusobacteriota
Fusobacterium vincentii subsp. vincentii ATCC 49256 [AABF]
51596
51519
-
His
GTG
[ENA]
¡û
>WENV180402304
OBRO01023438
[OBRO] human gut metagenome; ENVO:feces
27
102
+
His
GTG
[ENA]
¢þ
>WENV180698027
ODDE01022056
[ODDE] human metagenome; G_DNA_Supragingival plaque
451
376
-
His
GTG
[ENA]
¢þ
>WENV180718263
ODGF01020093
[ODGF] human metagenome; G_DNA_Throat
65
140
+
His
GTG
[ENA]
¢þ
>WENV180724459
ODGR01000876
[ODGR] human metagenome; G_DNA_Tongue dorsum
197
272
+
His
GTG
[ENA]
¢þ
>WENV180757061
ODHW01000017
[ODHW] human metagenome; G_DNA_Tongue dorsum
20030
19955
-
His
GTG
[ENA]
¢þ
>WENV180762991
ODIA01000019
[ODIA] human metagenome; G_DNA_Tongue dorsum
52720
52645
-
His
GTG
[ENA]
¢þ
>WENV180768336
ODIG01005337
[ODIG] human metagenome; G_DNA_Tongue dorsum
95
170
+
His
GTG
[ENA]
¢þ
>WENV180768692
ODIG01013436
[ODIG] human metagenome; G_DNA_Tongue dorsum
2741
2666
-
His
GTG
[ENA]
¢þ
>WENV180769446
ODIG01073760
[ODIG] human metagenome; G_DNA_Tongue dorsum
83
158
+
His
GTG
[ENA]
¢þ
>WENV180790599
ODIT01021681
[ODIT] human metagenome; G_DNA_Tongue dorsum
243
168
-
His
GTG
[ENA]
¢þ
>WENV180792517
ODIW01000703
[ODIW] human metagenome; G_DNA_Tongue dorsum
562
487
-
His
GTG
[ENA]
¢þ
>WENV180794741
ODIZ01004644
[ODIZ] human metagenome; G_DNA_Tongue dorsum
3457
3532
+
His
GTG
[ENA]
¢þ
>WENV180802527
ODJE01002934
[ODJE] human metagenome; G_DNA_Tongue dorsum
5897
5972
+
His
GTG
[ENA]
¢þ
>W141078893
ATKB01000053
Fusobacteriota
Fusobacterium vincentii subsp. vincentii ChDC F8 [ATKB]
14863
14938
+
His
GTG
[ENA]
¡û
>W141078927
ATKC01000060
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F316 [ATKC]
290
215
-
His
GTG
[ENA]
¡û
>WENV180816897
ODJP01099434
[ODJP] human metagenome; G_DNA_Tongue dorsum
161
86
-
His
GTG
[ENA]
¢þ
>WENV180855426
ODKX01108405
[ODKX] human metagenome; G_DNA_Tongue dorsum
161
86
-
His
GTG
[ENA]
¢þ
>WENV180861345
ODLE01002998
[ODLE] human metagenome; G_DNA_Tongue dorsum
2681
2606
-
His
GTG
[ENA]
¢þ
>WENV180863739
ODLH01001823
[ODLH] human metagenome; G_DNA_Tongue dorsum
2957
2882
-
His
GTG
[ENA]
¢þ
>WENV180874759
ODLQ01005300
[ODLQ] human metagenome; G_DNA_Tongue dorsum
219
144
-
His
GTG
[ENA]
¢þ
>WENV180880449
ODLZ01023206
[ODLZ] human metagenome; G_DNA_Tongue dorsum
377
302
-
His
GTG
[ENA]
¢þ
>WENV180883001
ODMC01001257
[ODMC] human metagenome; G_DNA_Tongue dorsum
9178
9253
+
His
GTG
[ENA]
¢þ
>WENV180890713
ODMO01010705
[ODMO] human metagenome; G_DNA_Tongue dorsum
109
184
+
His
GTG
[ENA]
¢þ
>WENV180929055
ODTN01000428
[ODTN] human metagenome; G_DNA_Tongue dorsum
25838
25763
-
His
GTG
[ENA]
¢þ
>WENV180929356
ODTN01001962
[ODTN] human metagenome; G_DNA_Tongue dorsum
7231
7306
+
His
GTG
[ENA]
¢þ
>WENV180953380
ODUI01026252
[ODUI] human metagenome; G_DNA_Tongue dorsum
343
418
+
His
GTG
[ENA]
¢þ
>WENV180964070
ODUO01000216
[ODUO] human metagenome; G_DNA_Supragingival plaque
8969
8894
-
His
GTG
[ENA]
¢þ
>WENV180967794
ODUT01003557
[ODUT] human metagenome; G_DNA_Tongue dorsum
561
486
-
His
GTG
[ENA]
¢þ
>WENV180968281
ODUT01016401
[ODUT] human metagenome; G_DNA_Tongue dorsum
596
521
-
His
GTG
[ENA]
¢þ
>WENV181011522
ODWI01042071
[ODWI] human metagenome; G_DNA_Tongue dorsum
161
86
-
His
GTG
[ENA]
¢þ
>WENV181013692
ODWN01002724
[ODWN] human metagenome; G_DNA_Tongue dorsum
5822
5897
+
His
GTG
[ENA]
¢þ
>WENV181017574
ODWR01152734
[ODWR] human metagenome; G_DNA_Tongue dorsum
72
147
+
His
GTG
[ENA]
¢þ
>WENV181038196
ODXQ01000588
[ODXQ] human metagenome; G_DNA_Tongue dorsum
25892
25817
-
His
GTG
[ENA]
¢þ
>WENV181038548
ODXQ01002103
[ODXQ] human metagenome; G_DNA_Tongue dorsum
10816
10891
+
His
GTG
[ENA]
¢þ
>WENV181040121
ODXQ01154458
[ODXQ] human metagenome; G_DNA_Tongue dorsum
109
184
+
His
GTG
[ENA]
¢þ
>WENV181041038
ODXS01003427
[ODXS] human metagenome; G_DNA_Tongue dorsum
6095
6170
+
His
GTG
[ENA]
¢þ
>WENV181045230
ODXW01000028
[ODXW] human metagenome; G_DNA_Tongue dorsum
100798
100873
+
His
GTG
[ENA]
¢þ
>WENV181057611
ODYL01000481
[ODYL] human metagenome; G_DNA_Tongue dorsum
5
80
+
His
GTG
[ENA]
¢þ
>WENV181058127
ODYL01004008
[ODYL] human metagenome; G_DNA_Tongue dorsum
6099
6174
+
His
GTG
[ENA]
¢þ
>WENV181094457
OEBY01000203
[OEBY] human metagenome; G_DNA_Tongue dorsum
20965
20890
-
His
GTG
[ENA]
¢þ
>WENV181097368
OECA01006799
[OECA] human metagenome; G_DNA_Tongue dorsum
3307
3232
-
His
GTG
[ENA]
¢þ
>WENV181103332
OECT01077288
[OECT] human metagenome; G_DNA_Tongue dorsum
83
158
+
His
GTG
[ENA]
¢þ
>WENV181103610
OECV01000538
[OECV] human metagenome; G_DNA_Throat
9609
9684
+
His
GTG
[ENA]
¢þ
>WENV181106365
OEED01128648
[OEED] human metagenome; G_DNA_Tongue dorsum
83
158
+
His
GTG
[ENA]
¢þ
>WENV181115570
OEEO01139607
[OEEO] human metagenome; G_DNA_Supragingival plaque
109
184
+
His
GTG
[ENA]
¢þ
>WENV181124747
OEFT01001299
[OEFT] human metagenome; G_DNA_Tongue dorsum
5310
5385
+
His
GTG
[ENA]
¢þ
>WENV181135279
OEGG01008410
[OEGG] human metagenome; G_DNA_Tongue dorsum
182
257
+
His
GTG
[ENA]
¢þ
>WENV181139046
OEGN01002551
[OEGN] human metagenome; G_DNA_Tongue dorsum
7015
6940
-
His
GTG
[ENA]
¢þ
>WENV181140233
OEGN01085003
[OEGN] human metagenome; G_DNA_Tongue dorsum
268
193
-
His
GTG
[ENA]
¢þ
>WENV181140428
OEGN01160689
[OEGN] human metagenome; G_DNA_Tongue dorsum
83
158
+
His
GTG
[ENA]
¢þ
>WENV181439085
OGDL01000213
[OGDL] metagenome; Human gut stool
5340
5415
+
His
GTG
[ENA]
¢þ
>WENV181454405
OGED01001323
[OGED] metagenome; Human gut stool
863
788
-
His
GTG
[ENA]
¢þ
>WENV181459384
OGEK01033379
[OGEK] metagenome; Human gut stool
254
179
-
His
GTG
[ENA]
¢þ
>WENV181460991
OGEM01000134
[OGEM] metagenome; Human gut stool
24182
24107
-
His
GTG
[ENA]
¢þ
>WENV181474141
OGFC01002198
[OGFC] metagenome; Human gut stool
8892
8817
-
His
GTG
[ENA]
¢þ
>WENV181475610
OGFE01000737
[OGFE] metagenome; Human gut stool
4590
4665
+
His
GTG
[ENA]
¢þ
>WENV181484179
OGFL01000722
[OGFL] metagenome; Human gut stool
24093
24018
-
His
GTG
[ENA]
¢þ
>WENV181551077
OGIN01000630
[OGIN] metagenome; Human gut stool
5341
5416
+
His
GTG
[ENA]
¢þ
>WENV181560464
OGJC01000269
[OGJC] metagenome; Human gut stool
39236
39311
+
His
GTG
[ENA]
¢þ
>WENV181561430
OGJD01002385
[OGJD] metagenome; Human gut stool
6411
6336
-
His
GTG
[ENA]
¢þ
>WENV181563128
OGJG01002425
[OGJG] metagenome; Human gut stool
5340
5415
+
His
GTG
[ENA]
¢þ
>WENV181569707
OGJM01000115
[OGJM] metagenome; Human gut stool
24105
24030
-
His
GTG
[ENA]
¢þ
>WENV181570207
OGJN01000106
[OGJN] metagenome; Human gut stool
66321
66396
+
His
GTG
[ENA]
¢þ
>WENV181573592
OGJR01022628
[OGJR] metagenome; Human gut stool
414
489
+
His
GTG
[ENA]
¢þ
>WENV181574701
OGJT01003777
[OGJT] metagenome; Human gut stool
900
825
-
His
GTG
[ENA]
¢þ
>W141157884
AXNU01000073
Fusobacteriota
Fusobacterium nucleatum CTI-7 [AXNU]
10372
10447
+
His
GTG
[ENA]
¡û
>W141158037
AXNY01000021
Fusobacteriota
Fusobacterium nucleatum CTI-2 [AXNY]
9479
9404
-
His
GTG
[ENA]
¡û
>WENV181629861
OGMP01007541
[OGMP] metagenome; Human gut stool
146
71
-
His
GTG
[ENA]
¢þ
>WENV181651969
OGNW01000224
[OGNW] metagenome; Human gut stool
34051
34126
+
His
GTG
[ENA]
¢þ
>W141168164
AXUR01000037
Fusobacteriota
Fusobacterium nucleatum W1481 [AXUR]
28331
28406
+
His
GTG
[ENA]
¡û
>WENV181820504
OGUD01000047
[OGUD] metagenome; Human gut stool
24092
24017
-
His
GTG
[ENA]
¢þ
>WENV181860170
OGWR01000165
[OGWR] human gut metagenome; faeces
33724
33799
+
His
GTG
[ENA]
¢þ
>WENV181900530
OGXV01015551
[OGXV] human gut metagenome; faeces
2138
2063
-
His
GTG
[ENA]
¢þ
>WENV181946692
OGZD01000075
[OGZD] human gut metagenome; faeces
90245
90320
+
His
GTG
[ENA]
¢þ
>WENV181948002
OGZE01000162
[OGZE] human gut metagenome; faeces
30329
30404
+
His
GTG
[ENA]
¢þ
>WENV181974318
OHAB01011619
[OHAB] human gut metagenome; faeces
1659
1584
-
His
GTG
[ENA]
¢þ
>WENV181986830
OHAM01004846
[OHAM] human gut metagenome; faeces
5869
5794
-
His
GTG
[ENA]
¢þ
>WENV181994064
OHAS01009813
[OHAS] human gut metagenome; faeces
4107
4032
-
His
GTG
[ENA]
¢þ
>WENV182002858
OHBA01022180
[OHBA] human gut metagenome; feces
556
481
-
His
GTG
[ENA]
¢þ
>WENV182499002
OITR01003219
[OITR] human gut metagenome; human gut
78
153
+
His
GTG
[ENA]
¢þ
>WENV182866753
OKRR01001161
[OKRR] human gut metagenome; faeces
21745
21820
+
His
GTG
[ENA]
¢þ
>WENV182975122
OKXT01003523
[OKXT] human gut metagenome; human gut
1051
1126
+
His
GTG
[ENA]
¢þ
>WENV183290279
OLSH01000086
[OLSH] human gut metagenome; faeces
64362
64437
+
His
GTG
[ENA]
¢þ
>WENV183402258
OLZU01026150
[OLZU] human gut metagenome; feces
707
782
+
His
GTG
[ENA]
¢þ
>WENV183497856
OMGN01064527
[OMGN] human gut metagenome; feces
108
33
-
His
GTG
[ENA]
¢þ
>WENV183510492
OMHO01005691
[OMHO] human oral metagenome; human oral
66
141
+
His
GTG
[ENA]
¢þ
>WENV183510729
OMHQ01005610
[OMHQ] human oral metagenome; human oral
278
353
+
His
GTG
[ENA]
¢þ
>WENV183554541
OOBM01031344
[OOBM] human gut metagenome; human gut
54
129
+
His
GTG
[ENA]
¢þ
>WENV183576968
OOCJ01003680
[OOCJ] human gut metagenome; human gut
603
678
+
His
GTG
[ENA]
¢þ
>WENV183760935
PPYE01245718
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
792
717
-
His
GTG
[ENA]
¢þ
>C181003894
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
175520
175595
+
His
GTG
-
¡û
>C181020506
CP016753
Fusobacteriota
Leptotrichia sp. oral taxon 498 F0590 [CP016753]
1068683
1068758
+
His
GTG
-
¡û
>C181058804
CP022122
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F317 [CP022122]
2138709
2138634
-
His
GTG
-
¡û
>C181105007
CP024749
Fusobacteriota
Fusobacterium vincentii KCOM 2931 [CP024749]
1584237
1584312
+
His
GTG
-
¡û
>C181160874
CP028101
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [CP028101]
605210
605285
+
His
GTG
-
¡û
>C181160919
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
632376
632451
+
His
GTG
-
¡û
>C181161019
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
924979
924904
-
His
GTG
-
¡û
>C181161077
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1223161
1223086
-
His
GTG
-
¡û
>C181161246
CP028109
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [CP028109]
671317
671392
+
His
GTG
-
¡û
>C181216773
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
3211219
3211144
-
His
GTG
-
¡û
>C191210220
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
3205315
3205390
+
His
GTG
-
¡û
>C191219282
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3067052
3066977
-
His
GTG
-
¡û
>W09118528
ACDB01000050
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [ACDB]
87745
87820
+
His
GTG
[ENA]
¡û
>W09118664
ACDE01000020
Fusobacteriota
Fusobacterium vincentii 4_1_13 [ACDE]
6552
6477
-
His
GTG
[ENA]
¡û
>W09118806
ACDH01000075
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
63026
63101
+
His
GTG
[ENA]
¡û
>W09125176
ACIE01000037
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
43353
43428
+
His
GTG
[ENA]
¡û
>W1910194489
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1088258
1088183
-
His
GTG
[ENA]
¡û
>C141001775
CP003700
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [CP003700]
160933
161008
+
His
GTG
[Ensembl]
¡û
>W1810076322
PEIJ01000001
Fusobacteriota
Fusobacterium vincentii subsp. vincentii KCOM 2880 [PEIJ]
800580
800505
-
His
GTG
[ENA]
¡û
>W1810790042
QRHI01000019
Fusobacteriota
Fusobacterium mortiferum AM25-18LB [QRHI]
24088
24013
-
His
GTG
[ENA]
¡û
>W1810790191
QRHL01000028
Fusobacteriota
Fusobacterium mortiferum AM25-1 [QRHL]
24075
24000
-
His
GTG
[ENA]
¡û
>W1810791348
QRIG01000012
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
26547
26622
+
His
GTG
[ENA]
¡û
>W1810818385
QSDE01000011
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
34959
34884
-
His
GTG
[ENA]
¡û
>W1810832229
QSOW01000019
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
21212
21137
-
His
GTG
[ENA]
¡û
>W1810839559
QSTZ01000006
Fusobacteriota
Fusobacterium mortiferum OM06-15BH [QSTZ]
92685
92760
+
His
GTG
[ENA]
¡û
>C151016837
CP007064
Fusobacteriota
Fusobacterium vincentii 3_1_27 [CP007064, CP007065]
160421
160496
+
His
GTG
[Ensembl]
¡û
>C151097764
CP012714
Fusobacteriota
Fusobacterium vincentii ChDC F8 KCOM 1231 [CP012714]
98303
98378
+
His
GTG
-
¡û
>C151097835
CP012716
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ChDC F316 KCOM 1322 [CP012716]
730369
730444
+
His
GTG
-
¡û
>C151097875
CP012717
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum KCOM 1250 [CP012717]
1768786
1768861
+
His
GTG
-
¡û
>W10102891
ACPU01000043
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [ACPU]
6829
6754
-
His
GTG
[ENA]
¡û
>W10113534
ADGF01000010
Fusobacteriota
Fusobacterium vincentii 3_1_27 [ADGF]
6542
6467
-
His
GTG
[ENA]
¡û
>W10119100
ADVK01000006
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
5156
5081
-
His
GTG
[ENA]
¡û
>W11103047
ACPU01000043
Fusobacteriota
Fusobacterium vincentii 3_1_36A2 [ACPU]
6829
6754
-
His
GTG
[ENA]
¡û
>W11116823
ADGF01000010
Fusobacteriota
Fusobacterium vincentii 3_1_27 [ADGF]
6542
6467
-
His
GTG
[ENA]
¡û
>W11125320
ADVK01000006
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 23726 [ADVK]
5156
5081
-
His
GTG
[ENA]
¡û
>W121102412
AKXI01000001
Fusobacteriota
Fusobacterium vincentii subsp. fusiforme ATCC 51190 [AKXI]
51610
51535
-
His
GTG
[ENA]
¡û
>W121021770
AGWJ01000062
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
35458
35383
-
His
GTG
[ENA]
¡û
>W1610744963
LMVH01000002
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum [LMVH]
167980
167905
-
His
GTG
[ENA]
¡û
>W1610907319
LSDD01000177
Fusobacteriota
Leptotrichia wadei [LSDD]
3388
3463
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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