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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.248697 (13 seq.)
>C000527
CP000251
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [CP000251]
1363057
1363134
+
Ile
GAT
[Ensembl]
¡û
>C000553
CP000251
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [CP000251]
2947304
2947227
-
Ile
GAT
[Ensembl]
¡û
>WENV180355908
OBNJ01006211
[OBNJ] sediment metagenome; sediment
562
487
-
Ile
GAT
[ENA]
¢þ
>W08007462
ABKC01000032
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [ABKC]
8415
8492
+
Ile
GAT
[ENA]
¡û
>C08000675
CP001131
Myxococcota
Anaeromyxobacter sp. K [CP001131]
1402963
1403040
+
Ile
GAT
[Ensembl]
¡û
>C08000702
CP001131
Myxococcota
Anaeromyxobacter sp. K [CP001131]
3007771
3007697
-
Ile
GAT
[Ensembl]
¡û
>W09101973
AAHD01000053
Myxococcota
Anaeromyxobacter dehalogenans 2CP-C [AAHD]
12446
12369
-
Ile
GAT
[ENA]
¡û
>W09107282
ABHX01000065
Myxococcota
Anaeromyxobacter sp. K [ABHX]
8253
8330
+
Ile
GAT
[ENA]
¡û
>W09107287
ABHX01000095
Myxococcota
Anaeromyxobacter sp. K [ABHX]
9151
9228
+
Ile
GAT
[ENA]
¡û
>C09100300
CP001359
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [CP001359]
1497290
1497367
+
Ile
GAT
[Ensembl]
¡û
>C09100327
CP001359
Myxococcota
Anaeromyxobacter dehalogenans 2CP-1 [CP001359]
3079863
3079786
-
Ile
GAT
[Ensembl]
¡û
>ENV09000688
ABSP01015568
Freshwater sediment metagenome lwMethane_C1
729
652
-
Ile
GAT
[ENA]
¡û
>W1510006509
BAZG01000249
Myxococcota
Anaeromyxobacter sp. PSR-1 [BAZG]
1784
1861
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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