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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.248767 (51 seq.)
>W1710892583
LNDW01000024
Betaproteobacteria
Betaproteobacteria bacterium Ga0077527 [LNDW]
493
418
-
Phe
GAA
[ENA]
¡û
>C000382
CP000539
Betaproteobacteria
Acidovorax sp. JS42 [CP000539]
4132101
4132026
-
Phe
GAA
[Ensembl]
¡û
>WENV181172288
OEIV010583669
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
129
204
+
Phe
GAA
[ENA]
¢þ
>WENV181732104
OGQD01010611
[OGQD] human gut metagenome; faeces
240
165
-
Phe
GAA
[ENA]
¢þ
>WENV170558277
CXWL01061005
[CXWL] groundwater metagenome; biofilm material
677
602
-
Phe
GAA
[ENA]
¢þ
>WENV170597382
FUIF01026113
[FUIF] marine metagenome; marine
52
127
+
Phe
GAA
[ENA]
¢þ
>WENV170707894
LNAP01038175
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2063
1988
-
Phe
GAA
[ENA]
¢þ
>WENV170708931
LNFM01000036
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
115870
115795
-
Phe
GAA
[ENA]
¢þ
>WENV170712554
LNFM01014793
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9328
9253
-
Phe
GAA
[ENA]
¢þ
>WENV170713118
LNFM01024205
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19
94
+
Phe
GAA
[ENA]
¢þ
>WENV170714143
LNFM01057073
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2498
2423
-
Phe
GAA
[ENA]
¢þ
>C181018999
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
3580419
3580494
+
Phe
GAA
-
¡û
>C191099888
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
4468416
4468341
-
Phe
GAA
-
¡û
>C191117064
CP033969
Betaproteobacteria
Cupriavidus pauculus FDAARGOS_614 [CP033969, CP033970]
869087
869162
+
Phe
GAA
-
¡û
>W09105954
AASD01000012
Betaproteobacteria
Acidovorax sp. JS42 [AASD]
22156
22231
+
Phe
GAA
[ENA]
¡û
>W09117949
ACCM01000006
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
44183
44258
+
Phe
GAA
[ENA]
¡û
>C09104061
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
3453607
3453532
-
Phe
GAA
[Ensembl]
¡û
>W1910803585
MTBE01000011
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
74031
73956
-
Phe
GAA
[ENA]
¡û
>W1911518769
OFTA01000001
Betaproteobacteria
Cupriavidus taiwanensis [OFTA]
150578
150503
-
Phe
GAA
[ENA]
¡û
>W1911519300
OFTJ01000022
Betaproteobacteria
Cupriavidus taiwanensis [OFTJ]
37941
37866
-
Phe
GAA
[ENA]
¡û
>W1911519481
OFTN01000001
Betaproteobacteria
Cupriavidus taiwanensis [OFTN]
34994
34919
-
Phe
GAA
[ENA]
¡û
>W1911519703
OFTR01000001
Betaproteobacteria
Cupriavidus taiwanensis [OFTR]
35896
35821
-
Phe
GAA
[ENA]
¡û
>W1911519755
OFTS01000001
Betaproteobacteria
Cupriavidus taiwanensis [OFTS]
34988
34913
-
Phe
GAA
[ENA]
¡û
>W1911532202
OGUS01000109
Betaproteobacteria
Cupriavidus oxalaticus [OGUS]
199438
199363
-
Phe
GAA
[ENA]
¡û
>W1911532277
OGUT01000017
Betaproteobacteria
Cupriavidus taiwanensis [OGUT]
168765
168840
+
Phe
GAA
[ENA]
¡û
>W1810062130
PDNW01000005
Betaproteobacteria
Pollutimonas subterranea JR1/69-3-13 [PDNW]
304745
304820
+
Phe
GAA
[ENA]
¡û
>W1810609650
QGUB01000008
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
16903
16978
+
Phe
GAA
[ENA]
¡û
>W1810683944
QKWJ01000031
Betaproteobacteria
Cupriavidus lacunae S23 [QKWJ]
40490
40565
+
Phe
GAA
[ENA]
¡û
>W1810696466
QLTI01000009
Betaproteobacteria
Cupriavidus alkaliphilus MtRBr-3211 [QLTI]
36086
36011
-
Phe
GAA
[ENA]
¡û
>C151070006
CP010516
Betaproteobacteria
Cupriavidus gilardii CR3 [CP010516, CP010517]
3438549
3438474
-
Phe
GAA
-
¡û
>W1510019824
BBXH01000035
Betaproteobacteria
Comamonas sp. E6 [BBXH]
17640
17715
+
Phe
GAA
[ENA]
¡û
>W1510019825
BBXH01000035
Betaproteobacteria
Comamonas sp. E6 [BBXH]
17892
17967
+
Phe
GAA
[ENA]
¡û
>C10104171
CP001220
Betaproteobacteria
Comamonas thiooxydans CNB-1 [CP001220]
397679
397754
+
Phe
GAA
[Ensembl]
¡û
>C10104172
CP001220
Betaproteobacteria
Comamonas thiooxydans CNB-1 [CP001220]
397928
398003
+
Phe
GAA
[Ensembl]
¡û
>W1511390768
JSYI01000091
Betaproteobacteria
Diaphorobacter sp. J5-51 [JSYI]
18161
18236
+
Phe
GAA
[ENA]
¡û
>W121108910
ALEE01000324
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
4411
4336
-
Phe
GAA
[ENA]
¡û
>W1610028543
AWOT01000007
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOT]
17688
17763
+
Phe
GAA
[ENA]
¡û
>W1610028544
AWOT01000007
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOT]
17940
18015
+
Phe
GAA
[ENA]
¡û
>W1610028545
AWOT01000007
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOT]
18192
18267
+
Phe
GAA
[ENA]
¡û
>W1610028897
AWTN01000128
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
17949
18024
+
Phe
GAA
[ENA]
¡û
>W1610042825
BAZJ01000045
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
3052
3127
+
Phe
GAA
[ENA]
¡û
>W1610077648
BCZP01000035
Betaproteobacteria
Delftia acidovorans NBRC 14950 [BCZP]
24477
24402
-
Phe
GAA
[ENA]
¡û
>W1610599207
LFJT01000032
Betaproteobacteria
Delftia sp. JD2 [LFJT]
3505
3430
-
Phe
GAA
[ENA]
¡û
>W1610752849
LNDW01000024
Betaproteobacteria
Betaproteobacteria bacterium Ga0077527 [LNDW]
493
418
-
Phe
GAA
[ENA]
¡û
>W1710024445
AWOT01000007
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOT]
17688
17763
+
Phe
GAA
[ENA]
¡û
>W1710024446
AWOT01000007
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOT]
17940
18015
+
Phe
GAA
[ENA]
¡û
>W1710024447
AWOT01000007
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOT]
18192
18267
+
Phe
GAA
[ENA]
¡û
>W1710026267
AWTN01000128
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
17949
18024
+
Phe
GAA
[ENA]
¡û
>W1710039985
BAZJ01000045
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
3052
3127
+
Phe
GAA
[ENA]
¡û
>W1710075286
BCZP01000035
Betaproteobacteria
Delftia acidovorans NBRC 14950 [BCZP]
24477
24402
-
Phe
GAA
[ENA]
¡û
>W1710530894
FNPE01000011
Betaproteobacteria
Delftia lacustris [FNPE]
154684
154759
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK