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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.248781 (53 seq.)
>W1710811720
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
361993
362068
+
Gln
TTG
[ENA]
¡û
>W1710863631
LMFH01000001
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
738664
738739
+
Gln
TTG
[ENA]
¡û
>W1710865788
LMGY01000012
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
911327
911402
+
Gln
TTG
[ENA]
¡û
>W1710865864
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
2320034
2320109
+
Gln
TTG
[ENA]
¡û
>W1711073069
LSIF01000027
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
65539
65464
-
Gln
TTG
[ENA]
¡û
>W131231895
AUIV01000004
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
63683
63758
+
Gln
TTG
[ENA]
¡û
>W1711386681
MEFQ01000091
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-48 [MEFQ]
12117
12192
+
Gln
TTG
[ENA]
¡û
>W1711386682
MEFQ01000093
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-48 [MEFQ]
7957
8032
+
Gln
TTG
[ENA]
¡û
>W1711424157
MIDV01000125
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_69_10 [MIDV]
287
212
-
Gln
TTG
[ENA]
¡û
>WENV180298528
OBJA01397329
[OBJA] soil metagenome; sediment, water from around vicinity
8
83
+
Gln
TTG
[ENA]
¢þ
>WENV181221731
OFCY01000001
[OFCY] metagenome; soil
58984
58909
-
Gln
TTG
[ENA]
¢þ
>WENV181221850
OFCZ01000073
[OFCZ] metagenome; soil
9406
9481
+
Gln
TTG
[ENA]
¢þ
>WENV181222432
OFDB01000020
[OFDB] metagenome; soil
8532
8607
+
Gln
TTG
[ENA]
¢þ
>W141149634
AWZR01000013
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
108482
108557
+
Gln
TTG
[ENA]
¡û
>WENV181732490
OGQD01044531
[OGQD] human gut metagenome; faeces
707
632
-
Gln
TTG
[ENA]
¢þ
>WENV183724801
PJQE01071010
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
50
125
+
Gln
TTG
[ENA]
¢þ
>WENV170010750
APMI01027532
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4424
4349
-
Gln
TTG
[ENA]
¢þ
>WENV170012179
APMI01131393
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
397
322
-
Gln
TTG
[ENA]
¢þ
>WENV170012381
APMI01166116
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1508
1433
-
Gln
TTG
[ENA]
¢þ
>WENV170574207
FLYM01013801
[FLYM] hot springs metagenome; Sediment
690
615
-
Gln
TTG
[ENA]
¢þ
>WENV170681041
LFEF01045967
[LFEF] freshwater metagenome; waterbloom
138
213
+
Gln
TTG
[ENA]
¢þ
>WENV170966064
MTEX01000612
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
4288
4363
+
Gln
TTG
[ENA]
¢þ
>C181021678
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
2544218
2544293
+
Gln
TTG
-
¡û
>C181080812
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
1336080
1336154
+
Gln
TTG
-
¡û
>C181180358
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
307557
307632
+
Gln
TTG
-
¡û
>C191139379
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
2494520
2494445
-
Gln
TTG
-
¡û
>C191165684
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
2370234
2370159
-
Gln
TTG
-
¡û
>W1911283668
NTJF01000003
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
94912
94987
+
Gln
TTG
[ENA]
¡û
>W1911283707
NTJG01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
237302
237227
-
Gln
TTG
[ENA]
¡û
>W1911283773
NTJH01000003
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
236013
235938
-
Gln
TTG
[ENA]
¡û
>W1911283833
NTJI01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
673604
673532
-
Gln
TTG
[ENA]
¡û
>W1911405201
NWQL01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
304387
304462
+
Gln
TTG
[ENA]
¡û
>W1911405276
NWQM01000004
Gammaproteobacteria
Xanthomonadaceae bacterium NML03-0222 [NWQM]
274015
273940
-
Gln
TTG
[ENA]
¡û
>W1911405297
NWQN01000015
Gammaproteobacteria
Xanthomonadaceae bacterium NML75-0749 [NWQN]
38682
38607
-
Gln
TTG
[ENA]
¡û
>W1911405376
NWQO01000016
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0268 [NWQO]
121471
121546
+
Gln
TTG
[ENA]
¡û
>W1911405423
NWQP01000029
Gammaproteobacteria
Xanthomonadaceae bacterium NML71-0210 [NWQP]
21897
21822
-
Gln
TTG
[ENA]
¡û
>W1911405449
NWQQ01000019
Gammaproteobacteria
Xanthomonadaceae bacterium NML95-0200 [NWQQ]
117074
116999
-
Gln
TTG
[ENA]
¡û
>W1911405482
NWQR01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML08-0793 [NWQR]
495611
495536
-
Gln
TTG
[ENA]
¡û
>W1911405544
NWQS01000012
Gammaproteobacteria
Xanthomonadaceae bacterium NML120232 [NWQS]
5170
5095
-
Gln
TTG
[ENA]
¡û
>W1911405587
NWQT01000019
Gammaproteobacteria
Xanthomonadaceae bacterium NML07-0707 [NWQT]
60006
60081
+
Gln
TTG
[ENA]
¡û
>W1911770908
QXJI01000003
Gammaproteobacteria
Lysobacter tabacisoli C8-1 [QXJI]
693550
693625
+
Gln
TTG
[ENA]
¡û
>W1810195858
PKSO01000002
Gammaproteobacteria
Pseudoxanthomonas sp. KAs_5_3 [PKSO]
261556
261631
+
Gln
TTG
[ENA]
¡û
>W1810692784
QLKV01000004
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
132327
132402
+
Gln
TTG
[ENA]
¡û
>W1511582583
LASZ01000032
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
18732
18807
+
Gln
TTG
[ENA]
¡û
>W1610675817
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
361993
362068
+
Gln
TTG
[ENA]
¡û
>W1610725977
LMFH01000001
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
738664
738739
+
Gln
TTG
[ENA]
¡û
>W1610728134
LMGY01000012
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
911327
911402
+
Gln
TTG
[ENA]
¡û
>W1610728210
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
2320034
2320109
+
Gln
TTG
[ENA]
¡û
>W1610912374
LSIF01000027
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
65539
65464
-
Gln
TTG
[ENA]
¡û
>W1710527383
FNKZ01000001
Gammaproteobacteria
Pseudoxanthomonas sp. CF385 [FNKZ]
1288378
1288453
+
Gln
TTG
[ENA]
¡û
>W1710579399
FPCI01000001
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
1209176
1209101
-
Gln
TTG
[ENA]
¡û
>W1710595310
FTLW01000003
Gammaproteobacteria
Lysobacter tolerans [FTLW]
122445
122370
-
Gln
TTG
[ENA]
¡û
>W1710604270
FUZV01000001
Gammaproteobacteria
Pseudoxanthomonas indica [FUZV]
970732
970657
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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