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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.248819 (45 seq.)
>W131215422
ATUZ01000016
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
277947
278022
+
Ala
CGC
[ENA]
¡û
>WENV180829554
ODKA01227529
[ODKA] human metagenome; G_DNA_Stool
91
166
+
Ala
CGC
[ENA]
¢þ
>WENV180926998
ODTL01134207
[ODTL] human metagenome; G_DNA_Stool
85
10
-
Ala
CGC
[ENA]
¢þ
>WENV180963448
ODUN01180132
[ODUN] human metagenome; G_DNA_Stool
227
302
+
Ala
CGC
[ENA]
¢þ
>WENV181024777
ODWX01192989
[ODWX] human metagenome; G_DNA_Stool
106
31
-
Ala
CGC
[ENA]
¢þ
>WENV181451673
OGDY01011314
[OGDY] metagenome; Human gut stool
3288
3213
-
Ala
CGC
[ENA]
¢þ
>WENV181525278
OGHJ01000114
[OGHJ] metagenome; Human gut stool
80336
80261
-
Ala
CGC
[ENA]
¢þ
>WENV181714546
OGPR01002783
[OGPR] human gut metagenome; faeces
9199
9124
-
Ala
CGC
[ENA]
¢þ
>WENV181747342
OGQN01022242
[OGQN] human gut metagenome; faeces
1509
1434
-
Ala
CGC
[ENA]
¢þ
>WENV181800546
OGRY01042870
[OGRY] human gut metagenome; faeces
40
115
+
Ala
CGC
[ENA]
¢þ
>WENV181893962
OGXQ01012068
[OGXQ] human gut metagenome; faeces
2225
2150
-
Ala
CGC
[ENA]
¢þ
>WENV181916254
OGYF01075055
[OGYF] human gut metagenome; faeces
254
329
+
Ala
CGC
[ENA]
¢þ
>WENV181995455
OHAT01003130
[OHAT] human gut metagenome; faeces
758
833
+
Ala
CGC
[ENA]
¢þ
>WENV182001891
OHAY01026148
[OHAY] human gut metagenome; faeces
1659
1584
-
Ala
CGC
[ENA]
¢þ
>WENV182030536
OHCR01019659
[OHCR] human gut metagenome; feces
379
454
+
Ala
CGC
[ENA]
¢þ
>WENV182182431
OHNQ01024820
[OHNQ] human gut metagenome; feces
670
595
-
Ala
CGC
[ENA]
¢þ
>WENV182536474
OIXH01000735
[OIXH] human gut metagenome; faeces
17726
17801
+
Ala
CGC
[ENA]
¢þ
>WENV182596016
OJIY01000325
[OJIY] metagenome; faeces
8942
8867
-
Ala
CGC
[ENA]
¢þ
>WENV182710851
OJPD01001747
[OJPD] human gut metagenome; stool sample
2871
2946
+
Ala
CGC
[ENA]
¢þ
>WENV182727564
OJPW01000011
[OJPW] human gut metagenome; stool sample
124313
124388
+
Ala
CGC
[ENA]
¢þ
>WENV182740409
OJQL01012298
[OJQL] human gut metagenome; stool sample
1167
1092
-
Ala
CGC
[ENA]
¢þ
>WENV182882511
OKSB01000628
[OKSB] human gut metagenome; faeces
36778
36703
-
Ala
CGC
[ENA]
¢þ
>WENV182891257
OKSH01000504
[OKSH] human gut metagenome; faeces
33161
33086
-
Ala
CGC
[ENA]
¢þ
>WENV183222674
OLQM01002426
[OLQM] human gut metagenome; faeces
3600
3525
-
Ala
CGC
[ENA]
¢þ
>WENV183453932
OMDE01018775
[OMDE] human gut metagenome; feces
971
1046
+
Ala
CGC
[ENA]
¢þ
>WENV183492901
OMGI01001758
[OMGI] human gut metagenome; human gut
4336
4411
+
Ala
CGC
[ENA]
¢þ
>WENV183501355
OMGS01000092
[OMGS] human gut metagenome; human gut
52025
52100
+
Ala
CGC
[ENA]
¢þ
>WENV183505601
OMGX01009208
[OMGX] human gut metagenome; human gut
101
28
-
Ala
CGC
[ENA]
¢þ
>WENV183545391
OOAQ01002635
[OOAQ] human gut metagenome; human gut
405
330
-
Ala
CGC
[ENA]
¢þ
>WENV183775865
PPYF01072735
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2762
2687
-
Ala
CGC
[ENA]
¢þ
>WENV183788710
PPYF01370303
[PPYF] human gut metagenome; stool from patient with Crohn's disease
34086
34011
-
Ala
CGC
[ENA]
¢þ
>WENV170029132
CDYF01032054
[CDYF] gut metagenome; human stools
155
80
-
Ala
CGC
[ENA]
¢þ
>WENV170070990
CDZQ01042823
[CDZQ] gut metagenome; human stools
7865
7940
+
Ala
CGC
[ENA]
¢þ
>C181001580
AP017368
Thermodesulfobacteriota
Candidatus Desulfovibrio trichonymphae Rs-N31 [AP017368]
20018
19943
-
Ala
CGC
-
¡û
>C181081066
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
2584966
2584891
-
Ala
CGC
-
¡û
>C191149676
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
881323
881398
+
Ala
CGC
-
¡û
>W09118211
ACCT01000001
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
711443
711368
-
Ala
CGC
[ENA]
¡û
>C09103829
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
651248
651323
+
Ala
CGC
[Ensembl]
¡û
>W1810792942
QRJJ01000012
Thermodesulfobacteriota
Desulfovibrio sp. AM18-2 [QRJJ]
60655
60580
-
Ala
CGC
[ENA]
¡û
>W10111680
ADDR01000006
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
36361
36286
-
Ala
CGC
[ENA]
¡û
>W11107011
ACWM01000054
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
31465
31540
+
Ala
CGC
[ENA]
¡û
>W11114607
ADDR01000006
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
36361
36286
-
Ala
CGC
[ENA]
¡û
>C161068992
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
2548934
2548859
-
Ala
CGC
[Ensembl]
¡û
>W1710515581
FNBX01000002
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
77967
78042
+
Ala
CGC
[ENA]
¡û
>W1710579886
FPIW01000072
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
4031
3956
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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