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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.249110 (26 seq.)
>W131158385
AQUA01000002
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
116656
116729
+
Lys
TTT
[ENA]
¡û
>W131183097
ARRO01000001
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
74241
74314
+
Lys
TTT
[ENA]
¡û
>WENV180110925
OAPN01014011
[OAPN] marine metagenome; 2011
445
372
-
Lys
TTT
[ENA]
¢þ
>WENV181367728
OFQC01005283
[OFQC] freshwater metagenome; Freshwater Lake
40
113
+
Lys
TTT
[ENA]
¢þ
>WENV181368504
OFQL01012648
[OFQL] freshwater metagenome; Freshwater Lake
109
36
-
Lys
TTT
[ENA]
¢þ
>WENV181368926
OFQN01004286
[OFQN] freshwater metagenome; Freshwater Lake
608
681
+
Lys
TTT
[ENA]
¢þ
>WENV181401104
OFSF01056140
[OFSF] wastewater metagenome; Exp Tend VB 100WW
573
646
+
Lys
TTT
[ENA]
¢þ
>WENV181836008
OGVJ01000042
[OGVJ] freshwater metagenome; freshwater
9761
9688
-
Lys
TTT
[ENA]
¢þ
>WENV181836391
OGVJ01006293
[OGVJ] freshwater metagenome; freshwater
355
428
+
Lys
TTT
[ENA]
¢þ
>WENV181838260
OGVM01029462
[OGVM] freshwater metagenome; freshwater
166
241
+
Lys
TTT
[ENA]
¢þ
>WENV181839137
OGVN01072651
[OGVN] freshwater metagenome; freshwater
259
186
-
Lys
TTT
[ENA]
¢þ
>WENV181850957
OGWE01003768
[OGWE] freshwater metagenome; freshwater
613
540
-
Lys
TTT
[ENA]
¢þ
>WENV181853276
OGWI01001381
[OGWI] freshwater metagenome; freshwater
1256
1183
-
Lys
TTT
[ENA]
¢þ
>WENV181855601
OGWM01000007
[OGWM] freshwater metagenome; freshwater
2819
2892
+
Lys
TTT
[ENA]
¢þ
>WENV170599651
FUWD010084679
[FUWD] metagenome; unknown
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV170606016
FUWD010591955
[FUWD] metagenome; unknown
208
135
-
Lys
TTT
[ENA]
¢þ
>WENV170625447
FUWD013197668
[FUWD] metagenome; unknown
3082
3155
+
Lys
TTT
[ENA]
¢þ
>WENV170633687
FUWD013400195
[FUWD] metagenome; unknown
3082
3155
+
Lys
TTT
[ENA]
¢þ
>C181020899
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1215621
1215548
-
Lys
TTT
-
¡û
>C181020973
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1226295
1226222
-
Lys
TTT
-
¡û
>C181021045
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1188925
1188852
-
Lys
TTT
-
¡û
>C181021082
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1182285
1182212
-
Lys
TTT
-
¡û
>C181021157
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1201911
1201838
-
Lys
TTT
-
¡û
>C181021193
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1184577
1184504
-
Lys
TTT
-
¡û
>C181021194
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1183350
1183277
-
Lys
TTT
-
¡û
>C181021307
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1127967
1127894
-
Lys
TTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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