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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.249316 (6 seq.)
>WENV181840614
OGVP01004311
[OGVP] freshwater metagenome; freshwater
921
998
+
Cys
GCA
[ENA]
¢þ
>WENV181842102
OGVS01032242
[OGVS] freshwater metagenome; freshwater
202
279
+
Cys
GCA
[ENA]
¢þ
>WENV181847064
OGVY01003253
[OGVY] freshwater metagenome; freshwater
920
997
+
Cys
GCA
[ENA]
¢þ
>WENV181849576
OGWB01000028
[OGWB] freshwater metagenome; freshwater
11262
11185
-
Cys
GCA
[ENA]
¢þ
>WENV181850375
OGWD01000037
[OGWD] freshwater metagenome; freshwater
14943
14866
-
Cys
GCA
[ENA]
¢þ
>WENV181855475
OGWL01022415
[OGWL] freshwater metagenome; freshwater
526
449
-
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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