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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250230 (25 seq.)
>W1710782334
LJEZ01000015
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae [LJEZ]
71623
71548
-
Met
CAT
[ENA]
¡û
>W1710981670
LPPL01000053
Gammaproteobacteria
Enterobacter kobei [LPPL]
41867
41792
-
Met
CAT
[ENA]
¡û
>W1710983282
LPQL01000005
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LPQL]
59226
59301
+
Met
CAT
[ENA]
¡û
>C171010903
CP011662
Gammaproteobacteria
Enterobacter hormaechei CAV1176 [CP011662]
4774014
4773939
-
Met
CAT
-
¡û
>WENV182808941
OJWL01000469
[OJWL] human gut metagenome; human gut
495
570
+
Ile2
CAT
[ENA]
¢þ
>WENV182809037
OJWM01000080
[OJWM] human gut metagenome; human gut
223
298
+
Ile2
CAT
[ENA]
¢þ
>WENV182817940
OJZN01000003
[OJZN] human gut metagenome; human gut
42679
42604
-
Ile2
CAT
[ENA]
¢þ
>WENV182854014
OKMP01000130
[OKMP] human gut metagenome; human gut
9291
9366
+
Ile2
CAT
[ENA]
¢þ
>WENV182855417
OKNA01000012
[OKNA] human gut metagenome; human gut
115678
115753
+
Ile2
CAT
[ENA]
¢þ
>WENV182859337
OKOM01000054
[OKOM] human gut metagenome; human gut
17610
17685
+
Ile2
CAT
[ENA]
¢þ
>W141352798
JCLR01000014
Gammaproteobacteria
Enterobacter sp. MGH 6 [JCLR]
212339
212264
-
Met
CAT
[ENA]
¡û
>W141353178
JCLW01000010
Gammaproteobacteria
Enterobacter sp. MGH 1 [JCLW]
42604
42529
-
Met
CAT
[ENA]
¡û
>W1911425180
NXHI01000032
Gammaproteobacteria
Enterobacter cloacae 194 [NXHI]
3579
3504
-
Met
CAT
[ENA]
¡û
>W1911620138
PQKY01000009
Gammaproteobacteria
Enterobacter cloacae complex sp. ECNIH8 [PQKY]
97897
97822
-
Met
CAT
[ENA]
¡û
>W1911667679
QFLP01000090
Gammaproteobacteria
Enterobacter cloacae DZ3-15B [QFLP]
654
579
-
Met
CAT
[ENA]
¡û
>C151037954
CP008823
Gammaproteobacteria
Enterobacter cloacae ECNIH2 [CP008823]
466318
466393
+
Met
CAT
[Ensembl]
¡û
>C151084640
CP011572
Gammaproteobacteria
Enterobacter hormaechei CAV1311 [CP011572]
2026074
2025999
-
Met
CAT
[Ensembl]
¡û
>C151084913
CP011581
Gammaproteobacteria
Enterobacter hormaechei CAV1411 [CP011581]
139933
139858
-
Met
CAT
[Ensembl]
¡û
>C151084964
CP011584
Gammaproteobacteria
Enterobacter hormaechei CAV1668 [CP011584]
4791425
4791500
+
Met
CAT
[Ensembl]
¡û
>C151085813
CP011650
Gammaproteobacteria
Enterobacter hormaechei CAV1669 [CP011650]
4764782
4764857
+
Met
CAT
[Ensembl]
¡û
>W1610453171
FKET01000031
Gammaproteobacteria
Enterobacter roggenkampii cloacae [FKET]
49605
49530
-
Met
CAT
[ENA]
¡û
>W1610646793
LJEZ01000015
Gammaproteobacteria
Enterobacter cloacae subsp. cloacae [LJEZ]
71623
71548
-
Met
CAT
[ENA]
¡û
>W1610837661
LPPL01000053
Gammaproteobacteria
Enterobacter kobei [LPPL]
41867
41792
-
Met
CAT
[ENA]
¡û
>W1610839273
LPQL01000005
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii [LPQL]
59226
59301
+
Met
CAT
[ENA]
¡û
>W1710452799
FKET01000031
Gammaproteobacteria
Enterobacter roggenkampii cloacae [FKET]
49605
49530
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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