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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250410 (44 seq.)
>W1710979357
LPNY01000139
Campylobacterota
Arcobacter sp. EP1 [LPNY]
152678
152603
-
Lys
TTT
[ENA]
¡û
>W1711136352
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235019
235094
+
Lys
TTT
[ENA]
¡û
>W1711136356
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235429
235504
+
Lys
TTT
[ENA]
¡û
>W1711484277
MKCO01000006
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
185277
185352
+
Lys
TTT
[ENA]
¡û
>C171088997
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
694854
694779
-
Lys
TTT
-
¡û
>C171089001
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
694407
694332
-
Lys
TTT
-
¡û
>C171089005
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
693960
693885
-
Lys
TTT
-
¡û
>C171089009
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
693513
693438
-
Lys
TTT
-
¡û
>C171089013
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
693066
692991
-
Lys
TTT
-
¡û
>WENV181213106
OFBU01010176
[OFBU] metagenome; hydrothermal vent
640
715
+
Lys
TTT
[ENA]
¢þ
>WENV182555548
OJDB01004988
[OJDB] seawater metagenome; Sea water
431
506
+
Lys
TTT
[ENA]
¢þ
>WENV182575684
OJFV01011182
[OJFV] seawater metagenome; Sea water
20
95
+
Lys
TTT
[ENA]
¢þ
>WENV182577434
OJGE01015202
[OJGE] seawater metagenome; Sea water
66
141
+
Lys
TTT
[ENA]
¢þ
>WENV182589176
OJHZ01014480
[OJHZ] seawater metagenome; Sea water
452
377
-
Lys
TTT
[ENA]
¢þ
>WENV182590579
OJIJ01000022
[OJIJ] seawater metagenome; Sea water
21093
21018
-
Lys
TTT
[ENA]
¢þ
>WENV183060148
OLHW01022101
[OLHW] seawater metagenome; Sea water
218
293
+
Lys
TTT
[ENA]
¢þ
>WENV183704485
PDWI01000300
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
79477
79552
+
Lys
TTT
[ENA]
¢þ
>WENV170012669
ASRN01000202
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10937
11012
+
Lys
TTT
[ENA]
¢þ
>WENV170012752
ASRO01000048
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
76
1
-
Lys
TTT
[ENA]
¢þ
>WENV170573019
FLOH01003871
[FLOH] marine metagenome; water
311
386
+
Lys
TTT
[ENA]
¢þ
>WENV170635305
JDSF01001266
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
144
69
-
Lys
TTT
[ENA]
¢þ
>WENV170635582
JDSG01000170
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
216
141
-
Lys
TTT
[ENA]
¢þ
>WENV170635656
JDSG01015437
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
194
119
-
Lys
TTT
[ENA]
¢þ
>WENV170640749
JFJP01024328
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4584
4509
-
Lys
TTT
[ENA]
¢þ
>WENV170646397
JQGR01001334
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
1342
1417
+
Lys
TTT
[ENA]
¢þ
>WENV170704208
LLEJ01000015
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
13897
13822
-
Lys
TTT
[ENA]
¢þ
>WENV170704612
LLEL01009298
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
104
179
+
Lys
TTT
[ENA]
¢þ
>WENV170704902
LLEN01012086
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
240
165
-
Lys
TTT
[ENA]
¢þ
>WENV170780752
MAAB01019065
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
41
116
+
Lys
TTT
[ENA]
¢þ
>WENV170780814
MAAB01024163
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
238
163
-
Lys
TTT
[ENA]
¢þ
>WENV170780880
MAAB01027501
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
168
93
-
Lys
TTT
[ENA]
¢þ
>WENV170780881
MAAB01027538
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
119
44
-
Lys
TTT
[ENA]
¢þ
>WENV170782983
MAAC01012511
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7236
7311
+
Lys
TTT
[ENA]
¢þ
>WENV170936247
MDTG01271920
[MDTG] marine metagenome; seawater
4221
4146
-
Lys
TTT
[ENA]
¢þ
>WENV170941784
MDTG01366386
[MDTG] marine metagenome; seawater
2653
2578
-
Lys
TTT
[ENA]
¢þ
>W1911717871
QQTC01000053
Campylobacterota
Arcobacter sp. HD9-500m-PIT-SAG03 [QQTC]
6223
6148
-
Lys
TTT
[ENA]
¡û
>W1810462576
PZYW01000008
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
272
197
-
Lys
TTT
[ENA]
¡û
>W1510014712
BBQE01000002
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
313047
313122
+
Lys
TTT
[ENA]
¡û
>C121011184
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
497280
497205
-
Lys
TTT
[Ensembl]
¡û
>C121011188
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
496868
496793
-
Lys
TTT
[Ensembl]
¡û
>C161001413
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
2191338
2191413
+
Lys
TTT
-
¡û
>W1610835348
LPNY01000139
Campylobacterota
Arcobacter sp. EP1 [LPNY]
152678
152603
-
Lys
TTT
[ENA]
¡û
>W1610947472
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235019
235094
+
Lys
TTT
[ENA]
¡û
>W1610947476
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
235429
235504
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK