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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250614 (6 seq.)
>C171103267
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
575880
575803
-
Arg
ACG
-
¡û
>WENV181231337
OFEK01020634
[OFEK] activated sludge metagenome; Anaerobic digester
275
352
+
Arg
ACG
[ENA]
¢þ
>C181120998
CP025628
Betaproteobacteria
Candidatus Kinetoplastibacterium sorsogonicusi MF-08 [CP025628]
171738
171815
+
Arg
ACG
-
¡û
>W1510741300
CYHF01000012
Betaproteobacteria
Thiomonas bhubaneswarensis DSM 18181 [CYHF]
25613
25536
-
Arg
ACG
[ENA]
¡û
>W1610632441
LIPV01000012
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
25613
25536
-
Arg
ACG
[ENA]
¡û
>W1710766827
LIPV01000012
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
25613
25536
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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