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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250707 (9 seq.)
>A171000200
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
962981
963058
+
Lys
CTT
-
¡û
>A171002581
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1920329
1920406
+
Lys
CTT
-
¡û
>A171003318
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1541937
1542014
+
Lys
CTT
-
¡û
>A171006642
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
130359
130436
+
Lys
CTT
-
¡û
>A171007114
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
1068730
1068653
-
Lys
CTT
-
¡û
>W1910229964
FOIW01000001
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
221366
221443
+
Lys
CTT
[ENA]
¡û
>W1910597294
LANF01000018
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
2304
2227
-
Lys
CTT
[ENA]
¡û
>W1610638239
LIXN01000009
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
161429
161352
-
Lys
CTT
[ENA]
¡û
>W1610717930
LLYW01000023
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
6278
6201
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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