This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250744 (75 seq.)
>W131227613
AUFH01000005
Actinomycetota
Bifidobacterium subtile DSM 20096 [AUFH]
159487
159562
+
Gly
GCC
[ENA]
¡û
>W131227634
AUFH01000012
Actinomycetota
Bifidobacterium subtile DSM 20096 [AUFH]
19440
19515
+
Gly
GCC
[ENA]
¡û
>WENV180930005
ODTN01040491
[ODTN] human metagenome; G_DNA_Tongue dorsum
449
376
-
Gly
GCC
[ENA]
¢þ
>W08009115
ABOT01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
344448
344523
+
Gly
GCC
[ENA]
¡û
>W08009119
ABOT01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
346707
346780
+
Gly
GCC
[ENA]
¡û
>W08009144
ABOT01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
826
899
+
Gly
GCC
[ENA]
¡û
>WENV181903643
OGXX01002025
[OGXX] human gut metagenome; faeces
10353
10426
+
Gly
GCC
[ENA]
¢þ
>WENV182340206
OIAD01038769
[OIAD] human gut metagenome; feces
109
36
-
Gly
GCC
[ENA]
¢þ
>WENV183075178
OLIV01017460
[OLIV] human gut metagenome; stool sample
25
100
+
Gly
GCC
[ENA]
¢þ
>WENV183511826
OMJG01005458
[OMJG] food metagenome; Cotija cheese
896
823
-
Gly
GCC
[ENA]
¢þ
>WENV183792830
PPYF01463606
[PPYF] human gut metagenome; stool from patient with Crohn's disease
74
1
-
Gly
GCC
[ENA]
¢þ
>WENV183792870
PPYF01464404
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3094
3021
-
Gly
GCC
[ENA]
¢þ
>WENV183792893
PPYF01465058
[PPYF] human gut metagenome; stool from patient with Crohn's disease
520
593
+
Gly
GCC
[ENA]
¢þ
>WENV183792899
PPYF01465153
[PPYF] human gut metagenome; stool from patient with Crohn's disease
5
78
+
Gly
GCC
[ENA]
¢þ
>WENV183792903
PPYF01465153
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2264
2337
+
Gly
GCC
[ENA]
¢þ
>C183000476
CP017696
Actinomycetota
Bifidobacterium asteroides DSM 20089 [CP017696]
839680
839753
+
Gly
GCC
-
¡û
>W141524070
JGYU01000004
Actinomycetota
Bifidobacterium choerinum [JGYU]
71089
71014
-
Gly
GCC
[ENA]
¡û
>W141524084
JGYU01000006
Actinomycetota
Bifidobacterium choerinum [JGYU]
103440
103367
-
Gly
GCC
[ENA]
¡û
>W141524091
JGYU01000010
Actinomycetota
Bifidobacterium choerinum [JGYU]
1176
1251
+
Gly
GCC
[ENA]
¡û
>W141524189
JGYW01000005
Actinomycetota
Bifidobacterium gallicum DSM 20093 = LMG 11596 [JGYW]
201649
201574
-
Gly
GCC
[ENA]
¡û
>W141524193
JGYW01000005
Actinomycetota
Bifidobacterium gallicum DSM 20093 = LMG 11596 [JGYW]
201236
201161
-
Gly
GCC
[ENA]
¡û
>W141524197
JGYW01000005
Actinomycetota
Bifidobacterium gallicum DSM 20093 = LMG 11596 [JGYW]
200823
200748
-
Gly
GCC
[ENA]
¡û
>W141524200
JGYW01000005
Actinomycetota
Bifidobacterium gallicum DSM 20093 = LMG 11596 [JGYW]
200476
200401
-
Gly
GCC
[ENA]
¡û
>W141524674
JGZG01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum [JGZG]
401421
401346
-
Gly
GCC
[ENA]
¡û
>W141524678
JGZG01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum [JGZG]
395525
395452
-
Gly
GCC
[ENA]
¡û
>W141524692
JGZG01000013
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum [JGZG]
16251
16178
-
Gly
GCC
[ENA]
¡û
>W141524785
JGZI01000010
Actinomycetota
Bifidobacterium psychraerophilum [JGZI]
193093
193018
-
Gly
GCC
[ENA]
¡û
>W141525995
JHAL01000002
Actinomycetota
Bifidobacterium crudilactis [JHAL]
778656
778581
-
Gly
GCC
[ENA]
¡û
>W1930020328
MWWR01000002
Actinomycetota
Pseudoscardovia radai DSM 24742 [MWWR]
151199
151273
+
Gly
GCC
[ENA]
¡û
>W1930020332
MWWR01000020
Actinomycetota
Pseudoscardovia radai DSM 24742 [MWWR]
2950
2877
-
Gly
GCC
[ENA]
¡û
>W1930029393
NPOQ01000016
Actinomycetota
Bifidobacterium sp. wkB344 [NPOQ]
287959
288032
+
Gly
GCC
[ENA]
¡û
>W1930029396
NPOR01000026
Actinomycetota
Bifidobacterium sp. wkB338 [NPOR]
22324
22397
+
Gly
GCC
[ENA]
¡û
>W1910828963
MWWS01000002
Actinomycetota
Bombiscardovia coagulans DSM 22924 [MWWS]
74144
74071
-
Gly
GCC
[ENA]
¡û
>W1910829370
MWXA01000005
Actinomycetota
Bifidobacterium aquikefiri LMG 28769 [MWXA]
346347
346274
-
Gly
GCC
[ENA]
¡û
>W1911768184
QXGI01000001
Actinomycetota
Bifidobacterium castoris 2020B [QXGI]
356812
356739
-
Gly
GCC
[ENA]
¡û
>W1911768189
QXGI01000001
Actinomycetota
Bifidobacterium castoris 2020B [QXGI]
206083
206010
-
Gly
GCC
[ENA]
¡û
>W1911768227
QXGI01000016
Actinomycetota
Bifidobacterium castoris 2020B [QXGI]
7731
7656
-
Gly
GCC
[ENA]
¡û
>W1810120969
PHUA01000001
Actinomycetota
Bifidobacterium psychraerophilum DSM 22366 [PHUA]
2117366
2117293
-
Gly
GCC
[ENA]
¡û
>W1810541612
QDIL01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
344576
344649
+
Gly
GCC
[ENA]
¡û
>W1810541616
QDIL01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
346835
346908
+
Gly
GCC
[ENA]
¡û
>W1810541644
QDIL01000004
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
181586
181513
-
Gly
GCC
[ENA]
¡û
>W1830000772
PCHJ01000013
Actinomycetota
Bifidobacterium asteroides 1460B [PCHJ]
124849
124922
+
Gly
GCC
[ENA]
¡û
>W1830000802
PDCH01000007
Actinomycetota
Bifidobacterium xylocopae XV2 [PDCH]
40861
40788
-
Gly
GCC
[ENA]
¡û
>W1830012121
QGLH01000003
Actinomycetota
Bifidobacterium asteroides ESL0170 [QGLH]
105934
106007
+
Gly
GCC
[ENA]
¡û
>W1830012126
QGLI01000005
Actinomycetota
Bifidobacterium indicum ESL0197 [QGLI]
514957
515030
+
Gly
GCC
[ENA]
¡û
>W1830012132
QGLJ01000007
Actinomycetota
Bifidobacterium asteroides ESL0198 [QGLJ]
544078
544151
+
Gly
GCC
[ENA]
¡û
>W1830012137
QGLK01000003
Actinomycetota
Bifidobacterium asteroides ESL0199 [QGLK]
61541
61614
+
Gly
GCC
[ENA]
¡û
>W1830012143
QGLL01000006
Actinomycetota
Bifidobacterium asteroides ESL0200 [QGLL]
383579
383652
+
Gly
GCC
[ENA]
¡û
>C151024241
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
1552613
1552686
+
Gly
GCC
[Ensembl]
¡û
>C151024254
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
1016519
1016444
-
Gly
GCC
[Ensembl]
¡û
>C151024258
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
1006277
1006204
-
Gly
GCC
[Ensembl]
¡û
>C10101355
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
1483201
1483274
+
Gly
GCC
[Ensembl]
¡û
>C10101367
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
959836
959761
-
Gly
GCC
[Ensembl]
¡û
>C10101371
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
957577
957504
-
Gly
GCC
[Ensembl]
¡û
>W11300394
ADCX01000004
Actinomycetota
Scardovia inopinata F0304 [ADCX]
47756
47831
+
Gly
GCC
[ENA]
¡û
>W11300433
ADEB01000010
Actinomycetota
Parascardovia denticolens F0305 [ADEB]
313250
313323
+
Gly
GCC
[ENA]
¡û
>W11301039
AEON01000001
Actinomycetota
Parascardovia denticolens DSM 10105 [AEON]
929950
930023
+
Gly
GCC
[ENA]
¡û
>C121013654
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
1477748
1477821
+
Gly
GCC
[Ensembl]
¡û
>C121013666
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
959831
959756
-
Gly
GCC
[Ensembl]
¡û
>C121013670
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
957572
957499
-
Gly
GCC
[Ensembl]
¡û
>C161087454
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
1438368
1438293
-
Gly
GCC
[Ensembl]
¡û
>C161087458
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
1434142
1434069
-
Gly
GCC
[Ensembl]
¡û
>W121031683
AHGW01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
186751
186676
-
Gly
GCC
[ENA]
¡û
>W121031687
AHGW01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
184492
184419
-
Gly
GCC
[ENA]
¡û
>W121031697
AHGW01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
177442
177515
+
Gly
GCC
[ENA]
¡û
>W1610514687
FMAM01000001
Actinomycetota
Bifidobacterium bohemicum [FMAM]
217935
218010
+
Gly
GCC
[ENA]
¡û
>W1610514691
FMAM01000001
Actinomycetota
Bifidobacterium bohemicum [FMAM]
218359
218432
+
Gly
GCC
[ENA]
¡û
>W1610519955
JDUQ01000013
Actinomycetota
Bifidobacterium psychraerophilum DSM 22366 [JDUQ]
133085
133160
+
Gly
GCC
[ENA]
¡û
>W1630009194
JDUG01000005
Actinomycetota
Bifidobacterium magnum DSM 20222 [JDUG]
65
138
+
Gly
GCC
[ENA]
¡û
>W1630009196
JDUG01000011
Actinomycetota
Bifidobacterium magnum DSM 20222 [JDUG]
51176
51101
-
Gly
GCC
[ENA]
¡û
>W1730011059
JDUG01000005
Actinomycetota
Bifidobacterium magnum DSM 20222 [JDUG]
65
138
+
Gly
GCC
[ENA]
¡û
>W1730011061
JDUG01000011
Actinomycetota
Bifidobacterium magnum DSM 20222 [JDUG]
51176
51101
-
Gly
GCC
[ENA]
¡û
>W1710500377
FMAM01000001
Actinomycetota
Bifidobacterium bohemicum [FMAM]
217935
218010
+
Gly
GCC
[ENA]
¡û
>W1710500381
FMAM01000001
Actinomycetota
Bifidobacterium bohemicum [FMAM]
218359
218432
+
Gly
GCC
[ENA]
¡û
>W1710615368
JDUQ01000013
Actinomycetota
Bifidobacterium psychraerophilum DSM 22366 [JDUQ]
133085
133160
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK