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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250746 (75 seq.)
>W1710864920
LMGG01000005
Actinomycetota
Nocardioides sp. Root151 [LMGG]
502514
502589
+
Ala
TGC
[ENA]
¡û
>W1710867742
LMIN01000009
Actinomycetota
Nocardioides sp. Root224 [LMIN]
461947
461872
-
Ala
TGC
[ENA]
¡û
>W1710867825
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
1009954
1009879
-
Ala
TGC
[ENA]
¡û
>W1710899473
LNIZ01000002
Actinomycetota
Trueperella bernardiae [LNIZ]
111270
111195
-
Ala
TGC
[ENA]
¡û
>W1711127136
LUPQ01000076
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
7227
7302
+
Ala
TGC
[ENA]
¡û
>W1711184920
LWMY01000007
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
34111
34186
+
Ala
TGC
[ENA]
¡û
>W1711185082
LWNB01000034
Actinomycetota
Trueperella sp. HMSC08B05 [LWNB]
34381
34456
+
Ala
TGC
[ENA]
¡û
>W1711621743
MPDM01000001
Actinomycetota
Boudabousia marimammalium [MPDM]
209086
209013
-
Ala
TGC
[ENA]
¡û
>W1711660599
MQSU01000001
Actinomycetota
Boudabousia liubingyangii VUL4_1 [MQSU]
522466
522393
-
Ala
TGC
[ENA]
¡û
>W1711660643
MQSV01000001
Actinomycetota
Boudabousia liubingyangii VUL4_2 [MQSV]
55308
55381
+
Ala
TGC
[ENA]
¡û
>W1711706700
MSRH01000029
Actinomycetota
Actinomyces naeslundii [MSRH]
97684
97759
+
Ala
TGC
[ENA]
¡û
>W1711707190
MSRR01000023
Actinomycetota
Actinomyces naeslundii [MSRR]
27639
27714
+
Ala
TGC
[ENA]
¡û
>W1711772083
MVGS01000066
Actinomycetota
Trueperella pyogenes [MVGS]
34934
35009
+
Ala
TGC
[ENA]
¡û
>W131222669
AUBL01000040
Actinomycetota
Actinomyces dentalis DSM 19115 [AUBL]
37204
37279
+
Ala
TGC
[ENA]
¡û
>WENV180787627
ODIS01010113
[ODIS] human metagenome; G_DNA_Supragingival plaque
2039
2114
+
Ala
TGC
[ENA]
¢þ
>WENV180922321
ODTJ01002620
[ODTJ] human metagenome; G_DNA_Supragingival plaque
3188
3113
-
Ala
TGC
[ENA]
¢þ
>WENV180944489
ODUC01019463
[ODUC] human metagenome; G_DNA_Supragingival plaque
331
406
+
Ala
TGC
[ENA]
¢þ
>WENV180979827
ODVC01002832
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
665
738
+
Ala
TGC
[ENA]
¢þ
>WENV181063760
ODYP01003189
[ODYP] human metagenome; G_DNA_Supragingival plaque
4234
4160
-
Ala
TGC
[ENA]
¢þ
>W141284167
JALQ01000005
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
13525
13600
+
Ala
TGC
[ENA]
¡û
>WENV183511860
OMJG01006729
[OMJG] food metagenome; Cotija cheese
781
855
+
Ala
TGC
[ENA]
¢þ
>WENV170009554
APMI01000720
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
14
89
+
Ala
TGC
[ENA]
¢þ
>WENV170010283
APMI01012672
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3706
3631
-
Ala
TGC
[ENA]
¢þ
>WENV170011656
APMI01079510
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1232
1307
+
Ala
TGC
[ENA]
¢þ
>WENV170733991
LULK01000703
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
28073
28148
+
Ala
TGC
[ENA]
¢þ
>WENV170734876
LULK01027007
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
712
787
+
Ala
TGC
[ENA]
¢þ
>WENV170760802
LUMU01000207
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
7227
7302
+
Ala
TGC
[ENA]
¢þ
>WENV170761807
LUMV01023486
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
494
569
+
Ala
TGC
[ENA]
¢þ
>C181168804
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
1621676
1621751
+
Ala
TGC
-
¡û
>C181171301
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
940841
940766
-
Ala
TGC
-
¡û
>C181171519
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
1361589
1361514
-
Ala
TGC
-
¡û
>C191114697
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
1874638
1874713
+
Ala
TGC
-
¡û
>C191114732
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
934473
934548
+
Ala
TGC
-
¡û
>C191114804
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
1914975
1914900
-
Ala
TGC
-
¡û
>C191114826
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
1520158
1520233
+
Ala
TGC
-
¡û
>C191186989
CP041146
Actinomycetota
Nocardioides humi DCY24 [CP041146]
3075467
3075542
+
Ala
TGC
-
¡û
>C191208627
LR134357
Actinomycetota
Actinomyces israelii NCTC12972 [LR134357]
2234201
2234276
+
Ala
TGC
-
¡û
>W141815846
JQJL01000011
Actinomycetota
Nocardioides sp. UNC345MFTsu5.1 [JQJL]
336126
336051
-
Ala
TGC
[ENA]
¡û
>W1910281476
FQTT01000015
Actinomycetota
Actinomyces glycerinitolerans [FQTT]
102816
102889
+
Ala
TGC
[ENA]
¡û
>W1910339885
FTLI01000070
Actinomycetota
Actinomyces provencensis SN12 [FTLI]
24695
24770
+
Ala
TGC
[ENA]
¡û
>W1910442463
FWFG01000089
Actinomycetota
Brachybacterium nesterenkovii CIP104813 [FWFG]
566
492
-
Ala
TGC
[ENA]
¡û
>W1911768153
QXGH01000017
Actinomycetota
Nocardioides immobilis CCTCC AB 2017083 [QXGH]
2155
2080
-
Ala
TGC
[ENA]
¡û
>W1810085253
PESV01000003
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
395361
395286
-
Ala
TGC
[ENA]
¡û
>W1810187926
PKHY01000003
Actinomycetota
Trueperella bernardiae UMB0116 [PKHY]
55584
55511
-
Ala
TGC
[ENA]
¡û
>W1810201557
POAG01000001
Actinomycetota
Nocardioides sp. 616 [POAG]
20068
19995
-
Ala
TGC
[ENA]
¡û
>W1810484108
QASM01000010
Actinomycetota
Trueperella pyogenes SH01 [QASM]
66774
66847
+
Ala
TGC
[ENA]
¡û
>W1810626166
QHKX01000001
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
709357
709432
+
Ala
TGC
[ENA]
¡û
>W1810683887
QKWH01000005
Actinomycetota
Xylanimonas oleitrophica PW21 [QKWH]
121378
121451
+
Ala
TGC
[ENA]
¡û
>C151015796
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
7325
7252
-
Ala
TGC
[Ensembl]
¡û
>C151026357
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
1621800
1621875
+
Ala
TGC
[Ensembl]
¡û
>C151095926
CP012590
Actinomycetota
Actinomyces sp. oral taxon 414 F0588 [CP012590]
3513110
3513035
-
Ala
TGC
-
¡û
>C151096885
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
660792
660719
-
Ala
TGC
-
¡û
>W1510010497
BBLU01000007
Actinomycetota
Demequina mangrovi NBRC 105856 [BBLU]
148345
148420
+
Ala
TGC
[ENA]
¡û
>W1510010642
BBLX01000011
Actinomycetota
Demequina maris NBRC 109392 [BBLX]
187
112
-
Ala
TGC
[ENA]
¡û
>W1510010914
BBMD01000002
Actinomycetota
Demequina maris NBRC 109398 [BBMD]
47387
47312
-
Ala
TGC
[ENA]
¡û
>W1510010944
BBME01000009
Actinomycetota
Demequina iriomotensis NBRC 109399 [BBME]
67001
66926
-
Ala
TGC
[ENA]
¡û
>W1510011020
BBMF01000007
Actinomycetota
Demequina maris NBRC 110048 [BBMF]
281335
281260
-
Ala
TGC
[ENA]
¡û
>W10128198
BABV01000043
Actinomycetota
Actinomyces oris K20 [BABV]
14024
13949
-
Ala
TGC
[ENA]
¡û
>W11133236
AECW01000270
Actinomycetota
Actinomyces sp. oral taxon 171 oral taxon 171 str. F0337 [AECW]
3543
3468
-
Ala
TGC
[ENA]
¡û
>W11184398
BABV01000043
Actinomycetota
Actinomyces oris K20 [BABV]
14024
13949
-
Ala
TGC
[ENA]
¡û
>C161106442
LN849456
Actinomycetota
Devriesea agamarum IMP2 [LN849456]
2015650
2015725
+
Ala
TGC
-
¡û
>W1610049565
BBFC01000044
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
2813
2886
+
Ala
TGC
[ENA]
¡û
>W1610727266
LMGG01000005
Actinomycetota
Nocardioides sp. Root151 [LMGG]
502514
502589
+
Ala
TGC
[ENA]
¡û
>W1610730088
LMIN01000009
Actinomycetota
Nocardioides sp. Root224 [LMIN]
461947
461872
-
Ala
TGC
[ENA]
¡û
>W1610730171
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
1009954
1009879
-
Ala
TGC
[ENA]
¡û
>W1610759876
LNIZ01000002
Actinomycetota
Trueperella bernardiae [LNIZ]
111270
111195
-
Ala
TGC
[ENA]
¡û
>W1610938250
LUPQ01000076
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
7227
7302
+
Ala
TGC
[ENA]
¡û
>W1710045964
BBFC01000044
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
2813
2886
+
Ala
TGC
[ENA]
¡û
>W1710050227
BBRH01000007
Actinomycetota
Demequina sp. NBRC 110051 [BBRH]
141766
141691
-
Ala
TGC
[ENA]
¡û
>W1710050358
BBRK01000004
Actinomycetota
Demequina sp. NBRC 110054 [BBRK]
849628
849703
+
Ala
TGC
[ENA]
¡û
>W1710050403
BBRL01000004
Actinomycetota
Demequina sp. NBRC 110055 [BBRL]
493070
493145
+
Ala
TGC
[ENA]
¡û
>W1710050487
BBRM01000007
Actinomycetota
Demequina sp. NBRC 110056 [BBRM]
74911
74986
+
Ala
TGC
[ENA]
¡û
>W1710523580
FNIC01000004
Actinomycetota
Nocardioides szechwanensis [FNIC]
34942
34867
-
Ala
TGC
[ENA]
¡û
>W1710542670
FNZI01000005
Actinomycetota
Demequina mangrovi [FNZI]
72338
72263
-
Ala
TGC
[ENA]
¡û
>W1710743627
LGYI01000004
Actinomycetota
Trueperella bernardiae [LGYI]
156301
156226
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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