This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251197 (36 seq.)
>W1710863615
LMFG01000002
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
199748
199673
-
Arg
TCT
[ENA]
¡û
>W1710868770
LMJI01000002
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
438702
438627
-
Arg
TCT
[ENA]
¡û
>W1710877695
LMQI01000002
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
326649
326724
+
Arg
TCT
[ENA]
¡û
>W1710914191
LNTD01000143
Actinomycetota
Cellulomonas sp. B6 [LNTD]
26099
26026
-
Arg
TCT
[ENA]
¡û
>W1711505494
MKVO01000004
Actinomycetota
Micrococcales bacterium 73-15 [MKVO]
560989
560912
-
Arg
TCT
[ENA]
¡û
>WENV180691774
OCZS010211859
[OCZS] soil metagenome; soil
86
10
-
Arg
TCT
[ENA]
¢þ
>W141241281
CAHD01000234
Actinomycetota
Cellulomonas massiliensis JC225 [CAHD]
1373
1448
+
Arg
TCT
[ENA]
¡û
>W141279319
JAGF01000001
Actinomycetota
Cellulomonas sp. KRMCY2 [JAGF]
4396660
4396735
+
Arg
TCT
[ENA]
¡û
>WENV183734875
PJUA01000073
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
72563
72637
+
Arg
TCT
[ENA]
¢þ
>WENV183736212
PJUC01000146
[PJUC] soil metagenome; Soil enriched on filter paper
39779
39705
-
Arg
TCT
[ENA]
¢þ
>W141428877
JEOE01000011
Actinomycetota
Cellulomonas sp. HZM [JEOE]
55037
55112
+
Arg
TCT
[ENA]
¡û
>C181172997
CP029049
Actinomycetota
Miniimonas sp. S16 [CP029049]
3232386
3232459
+
Arg
TCT
-
¡û
>C191104240
CP033325
Actinomycetota
Georgenia faecalis ZLJ0423 [CP033325]
2516088
2516162
+
Arg
TCT
-
¡û
>C191164679
CP039291
Actinomycetota
Cellulomonas shaoxiangyii Z28 [CP039291]
2518585
2518660
+
Arg
TCT
-
¡û
>C191210078
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
1500698
1500625
-
Arg
TCT
-
¡û
>W1910129196
BHYL01000264
Actinomycetota
Cellulomonas algicola TKZ-21 [BHYL]
13277
13202
-
Arg
TCT
[ENA]
¡û
>W1910155498
BIMR01000352
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
1465
1539
+
Arg
TCT
[ENA]
¡û
>W1810058253
PDJH01000001
Actinomycetota
Flavimobilis soli DSM 21574 [PDJH]
819228
819155
-
Arg
TCT
[ENA]
¡û
>W1510010555
BBLV01000012
Actinomycetota
Demequina gelatinilytica NBRC 109390 [BBLV]
32525
32452
-
Arg
TCT
[ENA]
¡û
>W1510010837
BBMB01000014
Actinomycetota
Demequina subtropica NBRC 109396 [BBMB]
60867
60794
-
Arg
TCT
[ENA]
¡û
>W1510010955
BBME01000014
Actinomycetota
Demequina iriomotensis NBRC 109399 [BBME]
5838
5913
+
Arg
TCT
[ENA]
¡û
>W1510015717
BBRG01000001
Actinomycetota
Demequina globuliformis NBRC 106266 [BBRG]
377142
377215
+
Arg
TCT
[ENA]
¡û
>C11105049
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
1500674
1500601
-
Arg
TCT
[Ensembl]
¡û
>W1511595524
LBMY01000001
Actinomycetota
Cellulomonas sp. FA1 [LBMY]
410033
409958
-
Arg
TCT
[ENA]
¡û
>C161068407
CP014209
Actinomycetota
Isoptericola dokdonensis DS-3 [CP014209]
1251954
1251879
-
Arg
TCT
[Ensembl]
¡û
>W1610068124
BCRB01000120
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
6250
6325
+
Arg
TCT
[ENA]
¡û
>W1610725961
LMFG01000002
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
199748
199673
-
Arg
TCT
[ENA]
¡û
>W1610731116
LMJI01000002
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
438702
438627
-
Arg
TCT
[ENA]
¡û
>W1610740041
LMQI01000002
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
326649
326724
+
Arg
TCT
[ENA]
¡û
>W1610772550
LNTD01000143
Actinomycetota
Cellulomonas sp. B6 [LNTD]
26099
26026
-
Arg
TCT
[ENA]
¡û
>W1710050256
BBRH01000018
Actinomycetota
Demequina sp. NBRC 110051 [BBRH]
48772
48847
+
Arg
TCT
[ENA]
¡û
>W1710050432
BBRL01000009
Actinomycetota
Demequina sp. NBRC 110055 [BBRL]
164393
164468
+
Arg
TCT
[ENA]
¡û
>W1710065497
BCRB01000120
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
6250
6325
+
Arg
TCT
[ENA]
¡û
>W1710556177
FOKA01000001
Actinomycetota
Cellulomonas marina [FOKA]
239446
239371
-
Arg
TCT
[ENA]
¡û
>W1710566754
FOSE01000004
Actinomycetota
Cellulomonas sp. KH9 [FOSE]
268742
268667
-
Arg
TCT
[ENA]
¡û
>W1710610311
FYEZ01000002
Actinomycetota
Kytococcus aerolatus [FYEZ]
140685
140758
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK